RetrogeneDB ID: retro_mmur_1327

Retrocopy location

• Organism: Mouse Lemur (Microcebus murinus)
• Coordinates: scaffold_44917:974..1572(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: COQ5
• Ensembl ID: ENSMICG00000006371
• Aliases: None
• Description: coenzyme Q5 homolog, methyltransferase (S. cerevisiae) [Source:HGNC Symbol;Acc:28722]

Sequence

>retro_mmur_1327
CAGGCGCAGCATCAGAGAAAGCAGAAGAGGCAGTTAAGGGTTCAGCAAAATTTATCCTGGGAAGAAATTGCCAAAAAATA
CCAGAATGAAGAGGATTCCTTGGGCGGTTCCCATGTCATGGTCTGCAACATCAACAAGGAGATGCTAAAGGTGGGACTGC
AGAGAACCTTTGCTCAAGGACACAAAGTTGGACTTACATGGGTATTGGGAGATGCTGAAGAACTGCCCTTTAATGATGAC
AAGTTTGATATTTACACCATAGCCTTTGGGATCCAGAATGTTACACACATTGATCCGGCACTGCAGGAAGCCCATCAGGT
CCTGAAACCAGGAGGACGGTTTCTCTGCCTGGAGTTTAGCCAAGTGAACAATCCCCTCATACCCAGGCTTTATCATCTAT
ATAGCTTCCAGGTCATTCCTGTCCTGGGAGAGGTCATTGCAGGAGACTGGAAGTCCCTATCAGTACCTCAGAGAGAGTAT
CCGAAGGTTCCCATCGCAGGAAGAGTTCAAGGAGATGATAGAAGATGCGGGTTTCCACAAGGTGACTTATGAAAGTCTAA
CATCAGGCATTGTGGCCATTCATTCTGGCTTCAAACTT

Alignment

ORF - retro_mmur_1327 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 92.5 %
• Parental protein coverage: 95.22 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  QAQHHRKQKRQLRAQQNLSWEEIAKKYQNEEDSLGGSHVMVCDINKEMLKVGMQKAFAQGHKAGLSWVLG
          QAQH.RKQKRQLR.QQNLSWEEIAKKYQNEEDSLGGSHVMVC.INKEMLKVG.Q..FAQGHK.GL.WVLG
Retrocopy QAQHQRKQKRQLRVQQNLSWEEIAKKYQNEEDSLGGSHVMVCNINKEMLKVGLQRTFAQGHKVGLTWVLG

Parental  DAEELPFNDDKFDIYTIAFGIRNVTHIDQALQEAHRVLKPGGRFLCLEFSQVNNPLISRLYDLYSFQVIP
          DAEELPFNDDKFDIYTIAFGI.NVTHID.ALQEAH.VLKPGGRFLCLEFSQVNNPLI.RLY.LYSFQVIP
Retrocopy DAEELPFNDDKFDIYTIAFGIQNVTHIDPALQEAHQVLKPGGRFLCLEFSQVNNPLIPRLYHLYSFQVIP

Parental  VLGEVIAGDWKS-YQYLIESIRRFPSQEEFKEMIEDAGFHKVTYESLTSGIVAIHSGFKL
          VLGEVIAGDWKS.YQYL.ESIRRFPSQEEFKEMIEDAGFHKVTYESLTSGIVAIHSGFKL
Retrocopy VLGEVIAGDWKS>YQYLRESIRRFPSQEEFKEMIEDAGFHKVTYESLTSGIVAIHSGFKL

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Microcebus murinus was not studied using RNA-Seq expression data.

ChIP-Seq

Microcebus murinus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mmur_1327 retrocopy.

TSS

Microcebus murinus was not studied using FANTOM5 data.

Lab

retro_mmur_1327 was not experimentally validated.

Homology

Retrocopy orthology:

Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 6 retrocopies.

Species	Parental gene accession	Retrocopies number
Callithrix jacchus	ENSCJAG00000001205	4 retrocopies	retro_cjac_1277, retro_cjac_3050, retro_cjac_3383, retro_cjac_3415,
Microcebus murinus	ENSMICG00000006371	1 retrocopy	retro_mmur_1327 ,
Tupaia belangeri	ENSTBEG00000009255	1 retrocopy	retro_tbel_3288,