RetrogeneDB ID: | retro_mmur_1367 | ||
Retrocopy location | Organism: | Mouse Lemur (Microcebus murinus) | |
| Coordinates: | scaffold_4989:23307..23703(+) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | MED19 | ||
| Ensembl ID: | ENSMICG00000004907 | ||
| Aliases: | None | ||
| Description: | mediator complex subunit 19 [Source:HGNC Symbol;Acc:29600] |
Retrocopy-Parental alignment summary:
>retro_mmur_1367
CTGATCACACACTACAACCTGGAACATGCCTATAATAAATTCTGTGGGAAAAAGGTGAAGGAGAAACTAAGTAACTTCCT
GCCTGACCTGCCAGGGATGATTGATCTGGCTGGTTCCCATGATAACAGCAGCCTCCGCTCCCTCATTGAGAAGCCCCCTA
TTCTTGGTGGCTCTTTCAATCCTATCACAGGGACCATGCTGGCTGGCTTCCACCTCCACACTGGACTGTTGCCCGAGCAG
TGTCGTCTGATGCATATTCAGCTTCCCAAGAAGAAGAATAAGCACAAGCACAAACAGAGCCGTACTCAGGATCCCGGCCC
CCCAGGAACCCCATCTGATTCGGATCACAAGAAGAAGAAAAAGAAGAAAGAAGAGGATCCTGAACGGAAAAGGAAG
ORF - retro_mmur_1367 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 88.64 % |
| Parental protein coverage: | 77.19 % |
| Number of stop codons detected: | 0 |
| Number of frameshifts detected: | 0 |
Retrocopy - Parental Gene Alignment:
| Parental | LITHYNLEHAYNKFCGKKVKEKLSNFLPDLPGMIDLPGSHDNSSLRSLIEKPPILGGSFNPITGTMLAGF |
| LITHYNLEHAYNKFCGKKVKEKLSNFLPDLPGMIDL.GSHDNSSLRSLIEKPPILGGSFNPITGTMLAGF | |
| Retrocopy | LITHYNLEHAYNKFCGKKVKEKLSNFLPDLPGMIDLAGSHDNSSLRSLIEKPPILGGSFNPITGTMLAGF |
| Parental | RLHTGPLPEQCRLMHIQPPKKKNKHKHKQSRTQDPVPPETPSDSDHKKKKKKKEEDPERKRK |
| .LHTG.LPEQCRLMHIQ.PKKKNKHKHKQSRTQDP.PP.TPSDSDH.........DPERKRK | |
| Retrocopy | HLHTGLLPEQCRLMHIQLPKKKNKHKHKQSRTQDPGPPGTPSDSDHXXXXXXXXXDPERKRK |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Microcebus murinus was not studied using RNA-Seq expression data.
Microcebus murinus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_mmur_1367 retrocopy.
Microcebus murinus was not studied using FANTOM5 data.
retro_mmur_1367 was not experimentally validated.
Retrocopy orthology:
Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 2 parental genes, and 3 retrocopies.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Microcebus murinus | ENSMICG00000004907 | 1 retrocopy |
retro_mmur_1367 ,
|
| Monodelphis domestica | ENSMODG00000020110 | 2 retrocopies |