RetrogeneDB ID: retro_mmur_1401

Retrocopy location

• Organism: Mouse Lemur (Microcebus murinus)
• Coordinates: scaffold_5424:4701..5471(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: ACTR8
• Ensembl ID: ENSMICG00000013353
• Aliases: None
• Description: ARP8 actin-related protein 8 homolog (yeast) [Source:HGNC Symbol;Acc:14672]

Sequence

>retro_mmur_1401
AAACCTGAAAGTAATGAACAAAGACAAAATGGCTTTAAAATGGTGGAACAAGCAATATGGTCTAAAAAGATGTCAAATGG
TACAAGACGGATTCCTGTGTCCCCTGAACAGGCACACTCCTACAATAAGCAGATGCGACCTGCAATTTTAGATCACTGTT
CAGGAAATAAGTGGACAAACACATCTCATCACCCTGAGTATTTGGTAGGAGAAGAGGCCTTGTATGTTAATCCATTGGAC
TGTTATAATATTCACTGGCCTACCAGGAGAGGCCAGTTAAACATTCACTCAGGCCCGGGGGGCTCCCTTACAGCTGTTCT
GGCAGATATTGAAGTAATATGGTCCCATGCAATACAAAAATACCTGGAAATCCCACTGAAAGATTTAAAGTATTATAGAT
GTATCTTGTTAATTCCTGACATCTATAATAAGCAGCATGTGAAAGAACTAGTGAATATGATACTAATGAAGATGGGTTTT
TCAGGAATCGTGGTCCATCAGGAGTCTGTGTGTGCCACCTTTGGAAGTGGCTTAAGCAGTACTTGTATTGTAGATGTTGG
GGATCAGAAAACAAGTGTCTGTGTGTGGAAGATGGAGTGTCTCATCGGAACACTCGGCTCTGTCTGGCATATGGGGGATC
TGATGTGTCAAGATGTTTTTACTGGCTGATGCAGCGAGCTGGGTTTCCTTACAGAGAATGCCAATTAACAAATAAAATAG
ACTGCCTTCTTCTGCAGCACCTTAAAGAAACTTTTTGTCATTTAGATCAG

Alignment

ORF - retro_mmur_1401 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 96.51 %
• Parental protein coverage: 54.56 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  KPESNEQRQNGLKMVDQAIWSKKMSNGTRRIPVSPEQARSYNKQMRPAILDHCSGNKWTNTSHHPEYLVG
          KPESNEQRQNG.KMV.QAIWSKKMSNGTRRIPVSPEQA.SYNKQMRPAILDHCSGNKWTNTSHHPEYLVG
Retrocopy KPESNEQRQNGFKMVEQAIWSKKMSNGTRRIPVSPEQAHSYNKQMRPAILDHCSGNKWTNTSHHPEYLVG

Parental  EEALYVNPLDCYNIHWPIRRGQLNIHSGPGGPLTAVLADIEVIWCHAIQKYLEIPLKDLKYYRCILLIPD
          EEALYVNPLDCYNIHWP.RRGQLNIHSGPGG.LTAVLADIEVIW.HAIQKYLEIPLKDLKYYRCILLIPD
Retrocopy EEALYVNPLDCYNIHWPTRRGQLNIHSGPGGSLTAVLADIEVIWSHAIQKYLEIPLKDLKYYRCILLIPD

Parental  IYNKQHVKELVNMILMKMGFSGIVVHQESVCATFGSGLSSTCVVDVGDQKTSVC-CVEDGVSHRNTRLCL
          IYNKQHVKELVNMILMKMGFSGIVVHQESVCATFGSGLSSTC.VDVGDQKTSVC.CVEDGVSHRNTRLCL
Retrocopy IYNKQHVKELVNMILMKMGFSGIVVHQESVCATFGSGLSSTCIVDVGDQKTSVC<CVEDGVSHRNTRLCL

Parental  AYGGSDVSRCFYWLMQRAGFPYRECQLTNKMDCLLLQHLKETFCHLDQ
          AYGGSDVSRCFYWLMQRAGFPYRECQLTNK.DCLLLQHLKETFCHLDQ
Retrocopy AYGGSDVSRCFYWLMQRAGFPYRECQLTNKIDCLLLQHLKETFCHLDQ

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Microcebus murinus was not studied using RNA-Seq expression data.

ChIP-Seq

Microcebus murinus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mmur_1401 retrocopy.

TSS

Microcebus murinus was not studied using FANTOM5 data.

Lab

retro_mmur_1401 was not experimentally validated.

Homology

Retrocopy orthology:

Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Microcebus murinus	ENSMICG00000013353	1 retrocopy	retro_mmur_1401 ,