RetrogeneDB ID: | retro_mmur_1443 | ||
Retrocopy location | Organism: | Mouse Lemur (Microcebus murinus) | |
| Coordinates: | scaffold_6067:50267..51005(-) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | MAPKAPK5 | ||
| Ensembl ID: | ENSMICG00000010509 | ||
| Aliases: | None | ||
| Description: | mitogen-activated protein kinase-activated protein kinase 5 [Source:HGNC Symbol;Acc:6889] |
Retrocopy-Parental alignment summary:
>retro_mmur_1443
GATGCTCCAGTGAAGTTGTGTGACTTTGGATTTGCCAAAATTGACCAAGGTGATTTGATGACACCCCAGTTCACCCCTTA
TTATGTAGCACCTCAGGTACTAGAGGCACAGAGAAGACACCAGAAGGAGAAGTCTGGCATCATACCTACCTCACCAACGC
CATACACTTATAACAAGAGCTGTGACTTGTGGTCCCTAGGAGTGATTATTTATGTGATGCTGTGCGGATACCCTCCTTTT
TACTCCAAACACCACAGCCGGACTATCCCAAAGGATATGCGAAGAAAGATCATGACAGGCAGTTTTGAGTTCCCAGAGGA
AGAGTGGAGTCAGATTTCGGAGATGGCCAAAGATGTCGTGAGAAAGCTCCTGAAAGTCAAACCAGAGGAAAGACTCACCA
TTGAGGGAGTGTTGGACCACCCCTGGCTCAACTCGACTGAGGCCCTGGATAACGTGCTACCCTCTGCTCAACTGATGATG
GATAAGGCGGTGGTTGCAGGAATCCAGCAGGCTCATGCAGAGCAACTGGCCAACATGAGAATCCAAGATCTAAAAGTCAG
CCTCAAACCCCTGCACTCAGTGAACAACCCCATTCTGCGGAAGAGGAAGTTACTTGGCACCAAGCCAAAGGATGGTGTTT
ATATCCACGACCATGAGAATGGAGCCGAGGATTCAAATGTTGCTTTGGAAAAGCTCCGAGATGTGATTGCTCAGTGTATT
CTTCCCCAGGCTGGAGAG
ORF - retro_mmur_1443 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 99.59 % |
| Parental protein coverage: | 59.85 % |
| Number of stop codons detected: | 0 |
| Number of frameshifts detected: | 0 |
Retrocopy - Parental Gene Alignment:
| Parental | DAPVKLCDFGFAKIDQGDLMTPQFTPYYVAPQVLEAQRRHQKEKSGIIPTSPTPYTYNKSCDLWSLGVII |
| DAPVKLCDFGFAKIDQGDLMTPQFTPYYVAPQVLEAQRRHQKEKSGIIPTSPTPYTYNKSCDLWSLGVII | |
| Retrocopy | DAPVKLCDFGFAKIDQGDLMTPQFTPYYVAPQVLEAQRRHQKEKSGIIPTSPTPYTYNKSCDLWSLGVII |
| Parental | YVMLCGYPPFYSKHHSRTIPKDMRRKIMTGSFEFPEEEWSQISEMAKDVVRKLLKVKPEERLTIEGVLDH |
| YVMLCGYPPFYSKHHSRTIPKDMRRKIMTGSFEFPEEEWSQISEMAKDVVRKLLKVKPEERLTIEGVLDH | |
| Retrocopy | YVMLCGYPPFYSKHHSRTIPKDMRRKIMTGSFEFPEEEWSQISEMAKDVVRKLLKVKPEERLTIEGVLDH |
| Parental | PWLNSTEALDNVLPSAQLMMDKAVVAGIQQAHAEQLANMRIQDLKVSLKPLHSVNNPILRKRKLLGTKPK |
| PWLNSTEALDNVLPSAQLMMDKAVVAGIQQAHAEQLANMRIQDLKVSLKPLHSVNNPILRKRKLLGTKPK | |
| Retrocopy | PWLNSTEALDNVLPSAQLMMDKAVVAGIQQAHAEQLANMRIQDLKVSLKPLHSVNNPILRKRKLLGTKPK |
| Parental | DGVYIHDHENGAEDSNVALEKLRDVIAQCILPQAGK |
| DGVYIHDHENGAEDSNVALEKLRDVIAQCILPQAG. | |
| Retrocopy | DGVYIHDHENGAEDSNVALEKLRDVIAQCILPQAGE |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Microcebus murinus was not studied using RNA-Seq expression data.
Microcebus murinus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_mmur_1443 retrocopy.
Microcebus murinus was not studied using FANTOM5 data.
retro_mmur_1443 was not experimentally validated.
Retrocopy orthology:
Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 2 parental genes, and 2 retrocopies.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Loxodonta africana | ENSLAFG00000017919 | 1 retrocopy | |
| Microcebus murinus | ENSMICG00000010509 | 1 retrocopy |
retro_mmur_1443 ,
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