RetrogeneDB ID:

retro_mmur_1485

Retrocopy
location
Organism:Mouse Lemur (Microcebus murinus)
Coordinates:scaffold_68064:4987..5521(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:UEVLD
Ensembl ID:ENSMICG00000003117
Aliases:None
Description:UEV and lactate/malate dehyrogenase domains [Source:HGNC Symbol;Acc:30866]


Retrocopy-Parental alignment summary:






>retro_mmur_1485
ATGGAGTTCGACTGCGAGAGTCTGAGGCGGCTGCTTGGCAAGTACAAGTTCAGGGATCTAACTGTGGAAGAACTAAAGAA
TGTAAATGTATTTTTCCCACATTTTAGATATTCCATGGACACCTACGTTTTTAAAGATAGTTCCCAGAAAGACCTGCTGA
ATTTTACTGGCACTATTCCTGTGATGTATCAGGGTAATACATATAACTTACCAATTCGTTTCTGGATTTTGGATTCTCAC
CCTTTTGCTCCCCCCATTTGCTTCTTGAAGCCAACTGCAAATATGGGAATCTCAGTTGGAAAACATGTGGATGCTCAAGG
CAGAATATACTTGCCCTATCTCCAAAACTGGAGCCATCCTAAATCTGTCATTGTTGGATTAATTAAAGAAATGATTGCCA
AGTTTCAAGAGGAACTTCCTCTGTATTCTCTGTCATCATCTGATGAGGCACGGCAGGTAGACTTGCTAGCCTATATTGCA
AAAATCACTGAAGGTGTCTCAGACATAAATTCAAAGAGCTGGGCAAATCATGAA

ORF - retro_mmur_1485 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 94.38 %
Parental protein coverage: 53.96 %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalMEFDCESLRRLLGKYKFRDLTVEELKNVNVFFPHFRYSMDTYVFKDSSQKDLLNFTGTIPVMYQGNTYNL
MEFDCESLRRLLGKYKFRDLTVEELKNVNVFFPHFRYSMDTYVFKDSSQKDLLNFTGTIPVMYQGNTYNL
RetrocopyMEFDCESLRRLLGKYKFRDLTVEELKNVNVFFPHFRYSMDTYVFKDSSQKDLLNFTGTIPVMYQGNTYNL
ParentalPIRFWILDSHPFAPPICFLKPTANMGISVGKHVDAQGRIYLPYLQNWSHPKSVIVGLIKE-IAKFQEELP
PIRFWILDSHPFAPPICFLKPTANMGISVGKHVDAQGRIYLPYLQNWSHPKSVIVGLIKE.IAKFQEELP
RetrocopyPIRFWILDSHPFAPPICFLKPTANMGISVGKHVDAQGRIYLPYLQNWSHPKSVIVGLIKEMIAKFQEELP
ParentalLYSLSSSDEARQVDLLXXXXXXXXXVSDINSKSWANHE
LYSLSSSDEARQVDLL.........VSDINSKSWANHE
RetrocopyLYSLSSSDEARQVDLLAYIAKITEGVSDINSKSWANHE

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Microcebus murinus was not studied using RNA-Seq expression data.
Microcebus murinus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_mmur_1485 retrocopy.
Microcebus murinus was not studied using FANTOM5 data.
retro_mmur_1485 was not experimentally validated.

Retrocopy orthology:
Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 3 parental genes, and 4 retrocopies.

Species Parental gene accession Retrocopies number
Microcebus murinus ENSMICG00000003117 1 retrocopy
retro_mmur_1485 ,
Microcebus murinus ENSMICG000000171832 retrocopies
Mus musculus ENSMUSG000000432621 retrocopy



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