RetrogeneDB ID: retro_mmur_1532

Retrocopy location

• Organism: Mouse Lemur (Microcebus murinus)
• Coordinates: scaffold_7819:7116..7602(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMICG00000017255
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: DIO1
• Ensembl ID: ENSMICG00000014290
• Aliases: None
• Description: deiodinase, iodothyronine, type I [Source:HGNC Symbol;Acc:2883]

Sequence

>retro_mmur_1532
GGCGGCCCGGCGCCCAACTCTGAGGTGGTCCTGCCCGACGGCTTCCAGAGCCGGCGCATCCTTGACTACGCGCAGGGGAG
CCGCCCGCTGGTGCTCAACTTCGGCAGCTGCACCTGACCACCATTCATGGCGCGCATGAGCGCCTTCCAGCGCCTGGTCA
CCAAGTACCAGCGCGACGTGGACTTCCTCATCATTTACATTGAGGAAGCGCACCCCTCTGACGGCTGGATCACCACAGAC
TCTCCCTACATCATCCCGCAGCACCGGAGCCTGGAGGACCGGGTCAGCGCCGCCAGGGTGCTCCAGCGAGGGGCGCCCGG
CTGCTCTCTGGTCCTGGACACCATGGCCAACTCCAGCAGCTCGGCCTATGGCGCCTACTTTGAGCGCCTCTACGTCATAC
AGAGTGGCACCATTATGTACCAGGGCGGCCGTGGCCCTGACGGCTACCAGGTCTCCGAGCTGCGCGCCTGGCTAGAGCGC
TATGAT

Alignment

ORF - retro_mmur_1532 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 50.62 %
• Parental protein coverage: 64.26 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  GGLAPNCPVVRLSG-QRCNIWDFMQGNRPLVLNFGSCTUPSFLFKFDQFKRLIEDFSSIADFLIIYIEEA
          GG.APN..VV...G.Q...I.D..QG.RPLVLNFGSCT.P.F......F.RL........DFLIIYIEEA
Retrocopy GGPAPNSEVVLPDGFQSRRILDYAQGSRPLVLNFGSCT*PPFMARMSAFQRLVTKYQRDVDFLIIYIEEA

Parental  HASDGWAFKNN-VDIRNHRNLQDRLRAAHMLLARSPQCPVVVDTMQNQSCRLYAALPERLYVLQEGRILY
          H.SDGW........I..HR.L.DR..AA..L....P.C..V.DTM.N.S...Y.A..ERLYV.Q.G.I.Y
Retrocopy HPSDGWITTDSPYIIPQHRSLEDRVSAARVLQRGAPGCSLVLDTMANSSSSAYGAYFERLYVIQSGTIMY

Parental  KGKPGPWNYHPEEVRAVLEKLD
          .G..GP..Y...E.RA.LE..D
Retrocopy QGGRGPDGYQVSELRAWLERYD

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Microcebus murinus was not studied using RNA-Seq expression data.

ChIP-Seq

Microcebus murinus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mmur_1532 retrocopy.

TSS

Microcebus murinus was not studied using FANTOM5 data.

Lab

retro_mmur_1532 was not experimentally validated.

Homology

Retrocopy orthology:

Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 4 parental genes, and 4 retrocopies.

Species	Parental gene accession	Retrocopies number
Homo sapiens	ENSG00000211452	1 retrocopy	retro_hsap_65,
Gorilla gorilla	ENSGGOG00000015406	1 retrocopy	retro_ggor_1072,
Microcebus murinus	ENSMICG00000014290	1 retrocopy	retro_mmur_1532 ,
Tursiops truncatus	ENSTTRG00000009105	1 retrocopy	retro_ttru_1421,