RetrogeneDB ID: retro_mmur_1555

Retrocopy location

• Organism: Mouse Lemur (Microcebus murinus)
• Coordinates: scaffold_81822:292..856(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMICG00000014459
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: C15orf57
• Ensembl ID: ENSMICG00000008817
• Aliases: None
• Description: chromosome 15 open reading frame 57 [Source:HGNC Symbol;Acc:28295]

Sequence

>retro_mmur_1555
CTCAGATTCCACATGAAAATGTTTGAAGGTGGTGACTCTACAGCCACAAGATCTAGCCGGGATCTCTGGGCTGAAATCAG
TTCCTGTTTGCCAAATCCTGACCAAGAAGATGATGCCAGCAATGCCTTCTCAGACTCCTTGTGGATTCTTACCCTGAAAG
TGAAGGCCACAGAGGGGCCGCGGCCTTTGCTGTTGAGCTGCCTATAAAGCCTTGGGCTCCCTTGCAGGATTCAGAAATGT
ATTTAGCATCTCTAGAGAGGAAACGGAGAAGAATCAAAGGTTTAAATCAGGAAGTCACTCCAAGGACATGCTTCAAACCC
TGGCCCGTGCCAAGAAGGAACACTGGGATGGGTTCCTCCAGGAGAAGTTAGCATCAGAGTTCTTCGTGGATGGACTTGAT
TCCGGTGAGAGCACCTTGGAACATTTCAAGAGGTGGCTGCAGCCAGATAAAGTAGCCATCAGCTCAGAGGAGGTCCAGTG
TCTGATTCCTCCGGAGTCACAGGTAGGGAAGCCAGCGCTGGGGAAGAGCCAGCAGCCAGCGAGGAGCCACGGCGGCGGCA
GCAG

Alignment

ORF - retro_mmur_1555 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 86.46 %
• Parental protein coverage: 97.42 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 3

Retrocopy - Parental Gene Alignment:

Parental  LRFQMKMFEGVDCTSTRSSRDLWAEICSCLPNPDQEDGASNAFSDSF-VDSYPESEGQRGAAAFAVELPI
          LRF.MKMFEG.D.T.TRSSRDLWAEI.SCLPNPDQED.ASNAFSDS..VDSYPESEG.RGAAAFAVELPI
Retrocopy LRFHMKMFEGGDSTATRSSRDLWAEISSCLPNPDQEDDASNAFSDSL<VDSYPESEGHRGAAAFAVELPI

Parental  KPWAPLQDSEMYLASLERKLKRIKGLNQEVT-SKDMLRTLAQAKKECWDRFLQEKLASEFFVDGLDSDES
          KPWAPLQDSEMYLASLERK..RIKGLNQEVT.SKDML.TLA.AKKE.WD.FLQEKLASEFFVDGLDS.ES
Retrocopy KPWAPLQDSEMYLASLERKRRRIKGLNQEVT<SKDMLQTLARAKKEHWDGFLQEKLASEFFVDGLDSGES

Parental  TLEHFKRWLQPDKVAISTEEVQYLIPPESQVEKPA-AGEEPAAREEPPAAEQ
          TLEHFKRWLQPDKVAIS.EEVQ.LIPPESQV.KPA.AGEEPAA.EEP....Q
Retrocopy TLEHFKRWLQPDKVAISSEEVQCLIPPESQVGKPA<AGEEPAASEEPRRRQQ

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Microcebus murinus was not studied using RNA-Seq expression data.

ChIP-Seq

Microcebus murinus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mmur_1555 retrocopy.

TSS

Microcebus murinus was not studied using FANTOM5 data.

Lab

retro_mmur_1555 was not experimentally validated.

Homology

Retrocopy orthology:

Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Microcebus murinus	ENSMICG00000008817	1 retrocopy	retro_mmur_1555 ,
Otolemur garnettii	ENSOGAG00000009925	1 retrocopy	retro_ogar_2486,