RetrogeneDB ID: retro_mmur_223

Retrocopy location

• Organism: Mouse Lemur (Microcebus murinus)
• Coordinates: GeneScaffold_1854:67108..67995(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: CRTC2
• Ensembl ID: ENSMICG00000010302
• Aliases: None
• Description: CREB regulated transcription coactivator 2 [Source:HGNC Symbol;Acc:27301]

Sequence

>retro_mmur_223
AGTGTCTCTGCCCTCTCCTCCTCCATTTCCCCCCCTGTTCTGAGCCCCCCCTTGTCCATCTTCGACCCCTGGGACCCCCC
ACCATCATCGTGTGCCTCTCAGCCCCCTGAGTTTGCCCGCAGGCCCCAATGATGCCAGAAGCTCCCAACAGCAGCTGCCC
AAACAGTTTTTGCCAACGATGTCACCCACCTTGTCTTCCATCACTCAGGGTGTCCCCCTGGACACGAGTAAACTGCCCAC
TGAGCAGCGGCTGCCCCCATATCCCTAGATCTCCACCCCGGCCTGATTCTGCCCACCCAGCCACCCACGCCAATGCCTCT
ACAGCAGCCAGGCTCCCTGCTCAGGCCTGCTCAGTGCAGCCCTCAGGTGGGCAGCCCCCCTGCAGAGCAGACAGCGTGTT
ATGCAACACTATACCCACCTGGGCCCGGTGGGCATGGGCAGAAGTCTTACCACCGGCCGATGAGTGACTTCAGGTTGGGG
AACCTCGAGCAGTTTGGCATGAAGAGCCCATCAGCCAGCCTAGCGCTGGACCCCTCTGGCTTTTCCAAAGAGCCTGAATT
TTTAGGGGGTGAGGGACCAGTGGGCGGCCCCCAGGATCCCCACTCCCTCCACTACCAGAACTTGACCCCCTGTTCCTGCC
ACGGCTCAGGGCCTAACATCATCCTCACAGGGAGGCTCCTCTCCAGGTTTCTCTAAGGAGATTGCAGCAGCCCTGGCCGG
AGTGCCTGGCTGTGAGTGTCAGCAGCTGGGTTGGAACCGGGGCTGGGCTAGAAGATGAGCTTCGCATGGAGCCACTGGGC
CTGGAAAGGCTAAACGTGCTGAGTGACCCCTGTGCCCTGCTGCCTGACCCCATGTCGGAGGATTCATTCCACAGTGACCA
GCTCCAG

Alignment

ORF - retro_mmur_223 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 79.93 %
• Parental protein coverage: 53.83 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 8

Retrocopy - Parental Gene Alignment:

Parental  SSSSSSSTSSP-VLGAPSYPASTPGASPRHRRVPLSPLSLPAGPADARRSQQQLPKQFSPTMSPTLSSIT
          S.S..SS..SP....AP..P.STPG..P.H.RVPLSPLSLPAGP.DAR.SQQQLPKQF.PTMSPTLSSIT
Retrocopy SVSALSSSISP>LF*APPCPSSTPG-TPHHHRVPLSPLSLPAGPNDARSSQQQLPKQFLPTMSPTLSSIT

Parental  QGVPLDTSKLSTDQRLPPY-PYSPP-GLVLPTQPPTPKPLQQPG-LPSQACSVQPSGGQP-PGRQLH-YG
          QGVPLDTSKL.T.QRLPPY.P.SPP.GL.LPTQPPTP.PLQQPG.LP.QACSVQPSGGQP.P..Q...Y.
Retrocopy QGVPLDTSKLPTEQRLPPY>PRSPP>GLILPTQPPTPMPLQQPG<LPAQACSVQPSGGQP>PAEQTACYA

Parental  TLYPPGPSGHGQQSYHRPMSDFSLGNLEQFGMESPSASLALDPSGFSEGPGFLGVEGPVGGPQDPHTLNH
          TLYPPGP.GHGQ.SYHRPMSDF.LGNLEQFGM.SPSASLALDPSGFS..P.FLG.EGPVGGPQDPH.L..
Retrocopy TLYPPGPGGHGQKSYHRPMSDFRLGNLEQFGMKSPSASLALDPSGFSKEPEFLGGEGPVGGPQDPHSLHY

Parental  QNLTHCSRHGSGPNIILT-EDSSPGFSKEIAAALAGVPGFE-VSAAGLELGL-GLEDELRMEPLGLEGLN
          QNLT.CS.HGSGPNIILT...SSPGFSKEIAAALAGVPG.E.VSAAGLE.GL.GLEDELRMEPLGLE.LN
Retrocopy QNLTPCSCHGSGPNIILT>GGSSPGFSKEIAAALAGVPGCE<VSAAGLEPGL<GLEDELRMEPLGLERLN

Parental  MLSDPCALLPDPAVEDSFRSDRLQ
          .LSDPCALLPDP..EDSF.SD.LQ
Retrocopy VLSDPCALLPDPMSEDSFHSDQLQ

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Microcebus murinus was not studied using RNA-Seq expression data.

ChIP-Seq

Microcebus murinus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mmur_223 retrocopy.

TSS

Microcebus murinus was not studied using FANTOM5 data.

Lab

retro_mmur_223 was not experimentally validated.

Homology

Retrocopy orthology:

Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Microcebus murinus	ENSMICG00000010302	1 retrocopy	retro_mmur_223 ,