RetrogeneDB ID: retro_mmur_246

Retrocopy location

• Organism: Mouse Lemur (Microcebus murinus)
• Coordinates: GeneScaffold_1968:122042..122400(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMICG00000017899
• Aliases: None
• Description: None

Sequence

>retro_mmur_246
GCAGAAGTGGTGAGACTCCTGGTAAACAGAAAGTGCCAACTTAACTTGTTTGATAGCAAAAAGAGAACTCCTCTGATGAA
GGCCATCCAATGCCAGGAGGAGGAATGTGTAACTGTTCTGCTGGAAGGTGGTGCCAGTCTCTATACTAGGGATGTCTATG
GCAACACTGTTCTTCACTGTGTTGTTTATCACCAGAATGTATCAATAGCAGAAAACTGCTCTCAAACAGTACATTTATCG
ATCCCCCAAACAAGAGTCATCTCATACCACTTTTACTTGCTGTAAGTGAAAAGAGAGGAAAATGGTGGAATTTTTAGTAA
AGAATGGAGCAAACATTAATGCAGTTGACAAGTTGAAA

Alignment

ORF - retro_mmur_246 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 54.1 %
• Parental protein coverage: 50.85 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  SEVVTILVNSLCDINVCDSTKTTPLMKAVQCHKGECTSILLKYGADPNRTDIYGNTALHHVAYHQDVSLA
          .EVV..LVN..C..N..DS.K.TPLMKA.QC...EC...LL..GA.....D.YGNT.LH.V.YHQ.VS.A
Retrocopy AEVVRLLVNRKCQLNLFDSKKRTPLMKAIQCQEEECVTVLLEGGASLYTRDVYGNTVLHCVVYHQNVSIA

Parental  -AKLLSYGANLEALNKDHLTPLLLAVRRTND-EMVKFLVEQNANINAVDKME
          ..KLLS........NK.HL.PLLLAV.......MV.FLV...ANINAVDK..
Retrocopy <RKLLSNSTFIDPPNKSHLIPLLLAVSEKRG<KMVEFLVKNGANINAVDKLK

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Microcebus murinus was not studied using RNA-Seq expression data.

ChIP-Seq

Microcebus murinus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mmur_246 retrocopy.

TSS

Microcebus murinus was not studied using FANTOM5 data.

Lab

retro_mmur_246 was not experimentally validated.

Homology

Retrocopy orthology:

Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 6 parental genes, and 8 retrocopies.

Species	Parental gene accession	Retrocopies number
Callithrix jacchus	ENSCJAG00000008211	2 retrocopies	retro_cjac_2331, retro_cjac_2672,
Microcebus murinus	ENSMICG00000017899	2 retrocopies	retro_mmur_1151, retro_mmur_246 ,
Macaca mulatta	ENSMMUG00000008983	1 retrocopy	retro_mmul_1761,
Nomascus leucogenys	ENSNLEG00000016858	1 retrocopy	retro_nleu_2713,
Pongo abelii	ENSPPYG00000019046	1 retrocopy	retro_pabe_1037,
Tupaia belangeri	ENSTBEG00000017150	1 retrocopy	retro_tbel_490,