RetrogeneDB ID: | retro_mmur_340 | ||
Retrocopylocation | Organism: | Mouse Lemur (Microcebus murinus) | |
Coordinates: | GeneScaffold_2484:189744..190853(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SUV39H2 | ||
Ensembl ID: | ENSMICG00000002803 | ||
Aliases: | None | ||
Description: | suppressor of variegation 3-9 homolog 2 (Drosophila) [Source:HGNC Symbol;Acc:17287] |
Percent Identity: | 97.57 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | KRNLNNYEVEYLCDYKVVKDMEYYLVKWKGWPDSTNTWEPLQNLKCPLLLQQFSNDKHNYLSQVKKGKAI |
KRNL.NYEVEYLCDYKVVKDMEYYLVKWKGWPDSTNTWEPLQNLKCPLLLQQFSNDKHNYLSQVKKGKAI | |
Retrocopy | KRNLKNYEVEYLCDYKVVKDMEYYLVKWKGWPDSTNTWEPLQNLKCPLLLQQFSNDKHNYLSQVKKGKAI |
Parental | TPKDNNKTLKPAVAEYIVKKAKQRIALQRWQDELNRRKNHKGMIFVENTVDLEGPPSDFYYINEYKPAPG |
TPKDNNKTLKPAVAEYIVKKAKQRIALQRWQ.ELNRRKNHKGMIFVENTVDLEGPPSDFYYINEYKPAPG | |
Retrocopy | TPKDNNKTLKPAVAEYIVKKAKQRIALQRWQEELNRRKNHKGMIFVENTVDLEGPPSDFYYINEYKPAPG |
Parental | ISLVNEATCGCSCTDCFFDKCCPAEAGVLLAYNKKQQIKIPPGTPIYECNSKCQCGPDCPNRIVQKGTQY |
ISLVNEATCGCSCTDCFFDKCCPAEAGVLLAYNKKQQIKIPPGTPIYECNSKCQCGPDCPNRIVQKGTQY | |
Retrocopy | ISLVNEATCGCSCTDCFFDKCCPAEAGVLLAYNKKQQIKIPPGTPIYECNSKCQCGPDCPNRIVQKGTQY |
Parental | SLCIFRTSNGRGWGVKTLVKIKRMSFVMEYVGEVITSEEAERRGQLYDNKGITYLFDLDYESDEFTVDAA |
SLCIFRTSNGRGWGVKTLVKIKRMSFVMEYVGEVITSEEAERRGQLYDNKGITYLFDLDYESDEFTVDAA | |
Retrocopy | SLCIFRTSNGRGWGVKTLVKIKRMSFVMEYVGEVITSEEAERRGQLYDNKGITYLFDLDYESDEFTVDAA |
Parental | RYGNVSHFVNHSCDPNLQVFNVFIDNLDTRLPRIAL-FSTRTINAGEELTFDYQMKGSGDISSDSIDHSP |
RYGNVSHFVNHSCDPNLQVFNVFIDNLDTRLPRIAL...TRTINAGEELT...QMKGS.DISSDSIDHSP | |
Retrocopy | RYGNVSHFVNHSCDPNLQVFNVFIDNLDTRLPRIAL<EATRTINAGEELTLECQMKGSEDISSDSIDHSP |
Parental | ARKRVRTVCKCGAVTCRGYLN |
ARKRVRTVCKCGAVTCRGYLN | |
Retrocopy | ARKRVRTVCKCGAVTCRGYLN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000004696 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000008492 | 1 retrocopy | |
Homo sapiens | ENSG00000152455 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000028243 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000002803 | 1 retrocopy |
retro_mmur_340 ,
|
Nomascus leucogenys | ENSNLEG00000012108 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000015090 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000009465 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000002106 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000006477 | 4 retrocopies |