RetrogeneDB ID: retro_mmur_407

Retrocopy location

• Organism: Mouse Lemur (Microcebus murinus)
• Coordinates: GeneScaffold_2850:295446..296094(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: SURF1
• Ensembl ID: ENSMICG00000007597
• Aliases: None
• Description: surfeit 1 [Source:HGNC Symbol;Acc:11474]

Sequence

>retro_mmur_407
GTCCAGCGTCGGAAGTGGAAGTTGAAACTGACTGCAGAGTTAGAGTCTAGAGTTCTGGCTGAGCCTGTCCCTCTGCCAGC
AGACCTGGTGGAACTGAAAACACTGGAGTACAGGACGGTGAAGGTCAGAGAGCATTTTGACCACTCCAAGGAGCTCTACA
TGATGCCCCGGACCATGGCAGACCCTGCCTGGGAGGCCCAGGAGGCCGGCCGGATCTCCTCCTCAGCTGAGAGCGGGGCC
TACGTCAGCACTCCCTTCCACTGCACTCACCTGGAACCACAATCCTGGTCAATAGAGGGTTTGTCCCCGGGAAGACAGTG
AATCCTGACACCCGAAGGAAAGGCCAGATTGAGGGAGAAATGGACCTCGTTGGGATGGTGAGGCTGACAGAAACCAGGAA
GCCCTTTGTCCCCAAGAACAATCTGGAAAGGAACGACTTGGCATTACTGAGACCTGGAGGCCATGGCCAAGATCACAGGC
ACAGACCCCATTTTCATCGATAACAACTTCCAGAGCACAGTCCCTGGAGGACCTATTGGAGGGCAGACTAGAGTCACAGT
GAGGAATGTGCACATGCAGTACATCCTTACCTGGTATGAACTCTGTGCAGCCGCCTCATACCTGAAATTTCTACGTCAGA
GACCTGGT

Alignment

ORF - retro_mmur_407 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 83.71 %
• Parental protein coverage: 99.55 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  VQRRKWKLNLIAELESRVLAEPIPLPADPVELKALEYRPVKVRGHFDHSKELYMMPRTMVDPAREAQEAG
          VQRRKWKL.L.AELESRVLAEP.PLPAD.VELK.LEYR.VKVR.HFDHSKELYMMPRTM.DPA.EAQEAG
Retrocopy VQRRKWKLKLTAELESRVLAEPVPLPADLVELKTLEYRTVKVREHFDHSKELYMMPRTMADPAWEAQEAG

Parental  RISSSAESGAYVITPFHCPDL-GITILVNRGFVPRKKVNPDTRRKGQIEGEVDLVGMVRLTETRKPFVPE
          RISSSAESGAYV.TPFHC..L.G.TILVNRGFVP.K.VNPDTRRKGQIEGE.DLVGMVRLTETRKPFVP.
Retrocopy RISSSAESGAYVSTPFHCTHL<GTTILVNRGFVPGKTVNPDTRRKGQIEGEMDLVGMVRLTETRKPFVPK

Parental  NNPERNH-WYFRDLEAMARITGADPIFIDANFQSTVPGGPIGGQTRVTVRNEHMQYIITWYGLCAATSYL
          NN.ERN..W...DLEAMA.ITG.DPIFID.NFQSTVPGGPIGGQTRVTVRN.HMQYI.TWY.LCAA.SYL
Retrocopy NNLERND>WHY*DLEAMAKITGTDPIFIDNNFQSTVPGGPIGGQTRVTVRNVHMQYILTWYELCAAASYL

Parental  WFKKFLRRTPG
          ...KFLR..PG
Retrocopy ---KFLRQRPG

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Microcebus murinus was not studied using RNA-Seq expression data.

ChIP-Seq

Microcebus murinus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mmur_407 retrocopy.

TSS

Microcebus murinus was not studied using FANTOM5 data.

Lab

retro_mmur_407 was not experimentally validated.

Homology

Retrocopy orthology:

Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 3 retrocopies.

Species	Parental gene accession	Retrocopies number
Microcebus murinus	ENSMICG00000007597	1 retrocopy	retro_mmur_407 ,
Tupaia belangeri	ENSTBEG00000001205	2 retrocopies	retro_tbel_3656, retro_tbel_3841,