RetrogeneDB ID: | retro_mmur_605 | ||
Retrocopylocation | Organism: | Mouse Lemur (Microcebus murinus) | |
Coordinates: | GeneScaffold_4154:652734..653247(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PPIF | ||
Ensembl ID: | ENSMICG00000007086 | ||
Aliases: | None | ||
Description: | peptidylprolyl isomerase F [Source:HGNC Symbol;Acc:9259] |
Percent Identity: | 58.52 % |
Parental protein coverage: | 81.64 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 4 |
Parental | PSSSSAG-NPLVYLDV-GADGQPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMC- |
P...S.G.NP.V.......D...LG....EL..D.VPKTAENF.A..TGE.GFG.K.S.F.R..P.FMC. | |
Retrocopy | PPATSHG>NPTVFFNITSVDSKTLGHISFELFVDKVPKTAENFCAFNTGE*GFGHKCSCFDRIMPRFMC> |
Parental | QAGDF-TNHNGTGGRSIYGSRFPDENFTL-KHVGPGILSMANAGPNT-NGSQFFICTVKTEWLDGKHV-V |
..G...T..NGTGG.SIY...F.D.NF.L.KH.GPGILSMANAGPNT.NGS.FFICT.KTE.LD.KH... | |
Retrocopy | MVGGYFTCYNGTGGKSIYRKKF-DKNFILKKHTGPGILSMANAGPNT<NGS*FFICTAKTEGLDDKHA<I |
Parental | FGHVKEGMDVVKKIESFGSKNGKTSKKIVITDCGQL |
.G.VKEGM......E.F.S..GKTSKKI.I.DCGQL | |
Retrocopy | VGKVKEGMNIMEAMECFESRTGKTSKKITIMDCGQL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Equus caballus | ENSECAG00000008796 | 3 retrocopies | |
Homo sapiens | ENSG00000108179 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000007086 | 8 retrocopies |
retro_mmur_1266, retro_mmur_218, retro_mmur_515, retro_mmur_568, retro_mmur_605 , retro_mmur_694, retro_mmur_769, retro_mmur_87,
|
Nomascus leucogenys | ENSNLEG00000010567 | 1 retrocopy | |
Procavia capensis | ENSPCAG00000009406 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000002669 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000001713 | 2 retrocopies | |
Tupaia belangeri | ENSTBEG00000015457 | 1 retrocopy | |
Xenopus tropicalis | ENSXETG00000018981 | 1 retrocopy |