RetrogeneDB ID: | retro_mmur_658 | ||
Retrocopy location | Organism: | Mouse Lemur (Microcebus murinus) | |
| Coordinates: | GeneScaffold_4459:9113..9911(-) | ||
| Located in intron of: | ENSMICG00000009749 | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | TEF | ||
| Ensembl ID: | ENSMICG00000013518 | ||
| Aliases: | None | ||
| Description: | thyrotrophic embryonic factor [Source:HGNC Symbol;Acc:11722] |
Retrocopy-Parental alignment summary:
>retro_mmur_658
GTCTGCCGGAAACGAATGGAGAACCCCCTGAGCGAGGCACGCCTCGATAAGGAAAAGGGGAAAGAAAAGCTGGAGGAGGA
TGAGGCAGCAGCTGCCAGCACCATGGCAGTCTCAGCCTAACTCATGTCACCCATCTGGGACAAGACCATCCCATATGACG
GCGAGTCTTTCCACCTAGAGTACATGGACCTGGACGAGTTCCTGCTAGAGAATGGCATCCCTGCCAGCCCCACCCACCTG
GCCCAGAACCTGCTGCTTCCTGTGGCCGAGCTAGAAGGAAAGGAATCTGCCAGCTCTTCCACAGCGTCCCCACCATCCTC
CTCCACTGCCATCTTTCAGCCCTCTGAAACTGTGTCCAGCACAGAATCTTCCCTGGAAAAGGAGAGGGAGACTCCCAGTC
CCATTGACCCTAACTGTGTGGAGGTGGACGTGAACTTCAATCCTGACCCTGCTGACCTGGTTCTCTCCAGTGTACCAGGT
GGGGAGCTCTTCAACCCTCGGAAGCACAAGTTTGCAGAGGAGGACCTGAAGCCCCAGACTATGATCAAAAAGGCCAAGAA
GGTCTTTGTCCCCGATGAGCAGAAGGATGAAAAGTACTGGACAAGACGCAAGAAGAACAATGTGGCTGCTAAACGGTCAT
GGGACGCTTGGCGCCTGAAAGAAAATCAGATTACCATCCGGGCGGCCTTCCTGGAGAAGGAGAACACAGCCCTGCGGACG
GAGGTGGCCAAGCTATGCAAGGAGGTGGGCAAGTGCAAGACCATTGTGTCCAAGTATGAGACCAAGTACGGGCCCTTG
ORF - retro_mmur_658 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 95.49 % |
| Parental protein coverage: | 87.79 % |
| Number of stop codons detected: | 1 |
| Number of frameshifts detected: | 0 |
Retrocopy - Parental Gene Alignment:
| Parental | VLKKLMENPPREARLDKEKGKEKLEEDEAAAASTMAVSASLMPPIWDKTIPYDGESFHLEYMDLDEFLLE |
| V..K.MENP..EARLDKEKGKEKLEEDEAAAASTMAVSA.LM.PIWDKTIPYDGESFHLEYMDLDEFLLE | |
| Retrocopy | VCRKRMENPLSEARLDKEKGKEKLEEDEAAAASTMAVSA*LMSPIWDKTIPYDGESFHLEYMDLDEFLLE |
| Parental | NGIPASPTHLAQNLLLPVAELEGKESASSSTASPPSSSTAIFQPSETVSSTESSLEKERETPSPIDPNCV |
| NGIPASPTHLAQNLLLPVAELEGKESASSSTASPPSSSTAIFQPSETVSSTESSLEKERETPSPIDPNCV | |
| Retrocopy | NGIPASPTHLAQNLLLPVAELEGKESASSSTASPPSSSTAIFQPSETVSSTESSLEKERETPSPIDPNCV |
| Parental | EVDVNFNPDPADLVLSSVPGGELFNPRKHKFAEEDLKPQPMIKKAKKVFVPDEQKDEKYWTRRKKNNVAA |
| EVDVNFNPDPADLVLSSVPGGELFNPRKHKFAEEDLKPQ.MIKKAKKVFVPDEQKDEKYWTRRKKNNVAA | |
| Retrocopy | EVDVNFNPDPADLVLSSVPGGELFNPRKHKFAEEDLKPQTMIKKAKKVFVPDEQKDEKYWTRRKKNNVAA |
| Parental | KRSRDARRLKENQITIRAAFLEKENTALRTEVAELRKEVGKCKTIVSKYETKYGPL |
| KRS.DA.RLKENQITIRAAFLEKENTALRTEVA.L.KEVGKCKTIVSKYETKYGPL | |
| Retrocopy | KRSWDAWRLKENQITIRAAFLEKENTALRTEVAKLCKEVGKCKTIVSKYETKYGPL |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Microcebus murinus was not studied using RNA-Seq expression data.
Microcebus murinus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_mmur_658 retrocopy.
Microcebus murinus was not studied using FANTOM5 data.
retro_mmur_658 was not experimentally validated.
Retrocopy orthology:
Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Microcebus murinus | ENSMICG00000013518 | 1 retrocopy |
retro_mmur_658 ,
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