RetrogeneDB ID: retro_mmur_715

Retrocopy location

• Organism: Mouse Lemur (Microcebus murinus)
• Coordinates: GeneScaffold_480:3770..5054(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: NMT1
• Ensembl ID: ENSMICG00000016650
• Aliases: None
• Description: N-myristoyltransferase 1 [Source:HGNC Symbol;Acc:7857]

Sequence

>retro_mmur_715
GGCAATGAGACAGATTCAGCCCACGATCAGCCTGTGAAGATGAACTCCTTGCCAGCAGAGAGGATCCAGGAAATACAGAA
GGCCATTGAGCTGTTCTCAGTGGGTCAGGGACCTGCCAAAACCATGGAGGGGGCTAGCAAGAGAAGCTACCAGTTCTGGG
ATACGCAGCCTGTCCCCAAACTGGGCAAAGTGGTGAACACCCACGGTCCCACCGAACATGACAAAAACAACATCCGCCAG
GAGCCCTATACCCTGCCCCAGGACTTCACCTGGGATGCCTTGGACCTGGGGGACCGTGGTGTGCTAAAAGAACTATACAC
CTTCCTGAATGAGAACTATGTGGAAGATGATGACAACATGTTCCGATTTGATTATTCCCCAGAATTTTTTTTGTGGGCTC
TCCAGCCACCCGGCTGGCTCTCCCAGTGGCACTGCGGGGTTAGAGTGGTTTCAAGTCGAAAACTGGTTGGGTTTATTAGC
ACCATTCCAGCAAACATCCACATCTATGACACAGAGAAGAAGATGGTGGAGATTAACTTCCTGTGTGTACACAAGAAGTT
GCGCTCCAAGAGGGTGGCTCTAGTCCTGATCCAAGAGATAACCAGGCAGGTTCACCTGGAGGGCATTTTCCAAGCTGTTT
ACACTGCCGGTGTGGTACTACCAAAGCCTGTTGGCACCTGCAGGTACTGGCATCAGTCCCTAAACCCACAGAAGTTGATT
GAAGTGAAGTTCTCCCACCTGAGCAGAAATATGACCATACAGCATACCACGAAGCTCTACCGACTGCCAGAGACTCCCAA
GACAGCTGGGCTGTGACCAATGGAAAAAAAGGACATTCCAGTAGTGCACCAGCTCCTCACCAGGTACTTGGAGCAGTTTC
ACCTCATGCCAGTCATGAACCAGGAGGAGGTGGAGCACTGGTTCTTCCCCCAGGAGAATATCATCACTTTCGTGGTGGAG
AATGCAAATGGAGAGGTGATGGATTTCCTGAGTTTTTATACATTACCCTCCACCATCATGAACCATCCAACCCACAAGAG
TCTAAAAGCTGCTTATTCTTTCTACAACGTGCACACCCAGAGCCCTCTTCTAGACCTCATGAGTGACACCCTTGTTCTCA
CTGAAATGAAAGGGTTTGATGTGTTCAATGCACTGGACCTCATGGAGAACAAAACCTTCCTGGAGAAGCTCAAATTTGGC
ATTGGGGATGGCAACCTGCAGTATTACCTTTACAATCGGAAATGCCCCAGCATGGGGGCAGAGAAGGTGGGGCTGGTGCT
ACAA

Alignment

ORF - retro_mmur_715 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 91.63 %
• Parental protein coverage: 86.52 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  GSETDSAQDQPVKMNSLPAERIQEIQKAIELFSVGQGPAKTMEEASKRSYQFWDTQPVPKLGEVVNTHGP
          G.ETDSA.DQPVKMNSLPAERIQEIQKAIELFSVGQGPAKTME.ASKRSYQFWDTQPVPKLG.VVNTHGP
Retrocopy GNETDSAHDQPVKMNSLPAERIQEIQKAIELFSVGQGPAKTMEGASKRSYQFWDTQPVPKLGKVVNTHGP

Parental  VEPDKDNIRQEPYTLPQGFTWDALDLGDRGVLKELYTLLNENYVEDDDNMFRFDYSPEFLLWALRPPGWL
          .E.DK.NIRQEPYTLPQ.FTWDALDLGDRGVLKELYT.LNENYVEDDDNMFRFDYSPE...WAL.PPGWL
Retrocopy TEHDKNNIRQEPYTLPQDFTWDALDLGDRGVLKELYTFLNENYVEDDDNMFRFDYSPEXXXWALQPPGWL

Parental  PEWHCGVRVVSSRKLVGFISAIPANIHVYDTEKKMVEINFLCVHKKLRSKRVAPVLIREITRRVHLEGIF
          ..WHCGVRVVSSRKLVGFIS.IPANIH.YDTEKKMVEINFLCVHKKLRSKRVA.VLI.EITR.VHLEGIF
Retrocopy SQWHCGVRVVSSRKLVGFISTIPANIHIYDTEKKMVEINFLCVHKKLRSKRVALVLIQEITRQVHLEGIF

Parental  QAVYTAGVVLPKPVGTCRYWHRSLNPRKLIEVKFSHLSRNMTMQRTMKLYRLPEETPKTAGLRPMEKKDI
          QAVYTAGVVLPKPVGTCRYWH.SLNP.KLIEVKFSHLSRNMT.Q.T.KLYRLP.ETPKTAGL.PMEKKDI
Retrocopy QAVYTAGVVLPKPVGTCRYWHQSLNPQKLIEVKFSHLSRNMTIQHTTKLYRLP-ETPKTAGL*PMEKKDI

Parental  PVVHQLLTRYLKQFHLTPVMNQEEVEHWFFPQENIIDTFVVENANGEVTDFLSFYTLPSTIMNHPTHKSL
          PVVHQLLTRYL.QFHL.PVMNQEEVEHWFFPQENII.TFVVENANGEV.DFLSFYTLPSTIMNHPTHKSL
Retrocopy PVVHQLLTRYLEQFHLMPVMNQEEVEHWFFPQENII-TFVVENANGEVMDFLSFYTLPSTIMNHPTHKSL

Parental  KAAYSFYNVHTQTPLLDLMSDALVLAKMKGFDVFNALDLMENKTFLEKLKFGIGDGNLQYYLYNWKCPSM
          KAAYSFYNVHTQ.PLLDLMSD.LVL..MKGFDVFNALDLMENKTFLEKLKFGIGDGNLQYYLYN.KCPSM
Retrocopy KAAYSFYNVHTQSPLLDLMSDTLVLTEMKGFDVFNALDLMENKTFLEKLKFGIGDGNLQYYLYNRKCPSM

Parental  GAEKVGLVLQ
          GAEKVGLVLQ
Retrocopy GAEKVGLVLQ

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Microcebus murinus was not studied using RNA-Seq expression data.

ChIP-Seq

Microcebus murinus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mmur_715 retrocopy.

TSS

Microcebus murinus was not studied using FANTOM5 data.

Lab

retro_mmur_715 was not experimentally validated.

Homology

Retrocopy orthology:

Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 4 parental genes, and 5 retrocopies.

Species	Parental gene accession	Retrocopies number
Callithrix jacchus	ENSCJAG00000012649	1 retrocopy	retro_cjac_1366,
Microcebus murinus	ENSMICG00000016650	2 retrocopies	retro_mmur_1526, retro_mmur_715 ,
Otolemur garnettii	ENSOGAG00000012938	1 retrocopy	retro_ogar_1822,
Tursiops truncatus	ENSTTRG00000006270	1 retrocopy	retro_ttru_561,