RetrogeneDB ID: | retro_mmur_740 | ||
Retrocopy location | Organism: | Mouse Lemur (Microcebus murinus) | |
| Coordinates: | GeneScaffold_546:158643..159201(+) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | GPX3 | ||
| Ensembl ID: | ENSMICG00000000660 | ||
| Aliases: | None | ||
| Description: | glutathione peroxidase 3 (plasma) [Source:HGNC Symbol;Acc:4555] |
Retrocopy-Parental alignment summary:
>retro_mmur_740
AGGACGGACTGCAATGAAAATGTGACAGGTACCGTCTGTGAGGATGGAGCCCTCAGCCTTGATGGCGAGTACATGCAGTT
CAAGCGGCGTGCAGGCAAGCGTGTCCTCCCCGTCAATGCGCCGCCTGTTGAGGCTTGGCAGCTCAGTGTCCTGAACTGAA
TGCCCTACAGGAGGAGCTGAGGAATTTTGGTGTCATTGTGTCGGGCTTTCCCTGCAACCAGTTTGGAAAACAAGAACCAG
GAAAGAACTCAGAAACCCTTTCTGGGCTCAAGTATGTGGATGCAGGTGGAGGCTTTGTCCCCAGTTTCCTGCTCTTTGAA
AAAGGGGGTGTGAATGGAGAAAATGAACAAAAGGTCTTTGTTTTCCTTAAGAACTCCTGCCCTCTGACCACTGATCCTTT
GGGCTCATCGAGCCAACTCTTCTGGGAGCCCTTGAGGTCCCTGACATCTGCTGGAACTTTGAGAAGTCCCCGGTGGGGCC
CACTGGAGTCCTGCCATGCGCTGGCTCCACCGGGCTCCCGTCAGCACAGTCCCATCAGACGTCCCAGAGTACATGAAG
ORF - retro_mmur_740 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 60.21 % |
| Parental protein coverage: | 84.3 % |
| Number of stop codons detected: | 1 |
| Number of frameshifts detected: | 3 |
Retrocopy - Parental Gene Alignment:
| Parental | KTDCHGGVSGTIYEYGALTIDGDEYIPFKQYAGKYVLFVNV-ASFUGLTGQYVELNALQEELAPFGLVIL |
| .TDC...V.GT..E.GAL..DG.EY..FK..AGK.VL.VN..A...GL..Q..ELNALQEEL..FG.... | |
| Retrocopy | RTDCNENVTGTVCEDGALSLDG-EYMQFKRRAGKRVLPVNA<AAC*GLAAQCPELNALQEELRNFGVIVS |
| Parental | GFPCNQFGKQEPGDNSEILPTIKYVRPGGGFVPNFQLFEKGDVNGEKEQKFYTFLKNSCPPTSELLGSPG |
| GFPCNQFGKQEPG.NSE.L...KYV..GGGFVP.F.LFEKG.VNGE.EQK...FLKNSCP.T...LGS.. | |
| Retrocopy | GFPCNQFGKQEPGKNSETLSGLKYVDAGGGFVPSFLLFEKGGVNGENEQKVFVFLKNSCPLTTDPLGSSS |
| Parental | RLFWEPMK-IHDIRWNFEKFLVGPDGI-PVMRWHHRTTISNVKIDILSYMR |
| .LFWEP.....DI.WNFEK..VGP.G..P.MRW.HR...S.V..D...YM. | |
| Retrocopy | QLFWEPLR<VPDICWNFEKSPVGPTGV<PAMRWLHRAPVSTVPSDVPEYMK |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Microcebus murinus was not studied using RNA-Seq expression data.
Microcebus murinus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_mmur_740 retrocopy.
Microcebus murinus was not studied using FANTOM5 data.
retro_mmur_740 was not experimentally validated.
Retrocopy orthology:
Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 2 parental genes, and 2 retrocopies.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Microcebus murinus | ENSMICG00000000660 | 1 retrocopy |
retro_mmur_740 ,
|
| Sarcophilus harrisii | ENSSHAG00000001286 | 1 retrocopy |