RetrogeneDB ID: retro_mmur_836

Retrocopy location

• Organism: Mouse Lemur (Microcebus murinus)
• Coordinates: scaffold_10839:50194..50919(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: MLF1IP
• Ensembl ID: ENSMICG00000013084
• Aliases: None
• Description: MLF1 interacting protein [Source:HGNC Symbol;Acc:21348]

Sequence

>retro_mmur_836
CCAGCTGAATTGGTCATTCCTACAAAGATAGGACCACTTACTGCCCAGCCCTCTGTTGAAAAAGAGACCCTGGCAACAGA
AAATAGACCGAAAACTCAGGAAAAAGTTAAGATGTCTTGTGACACAAGGGAAAAATCAAGAAGTAAAACTACAGACTCAG
ATACTTCCAATATTCTAGATATTTGGTGTCTAGAAGGAAAGAAAACCAGTGATATCATGGAGTTGGATATTGTGCTGCCT
ACATTTGAGAAAACCCTCCTACAGTATAAACAAAGAATAAAATCCAAAATTTGTAAGGAAGCCATCAACAAATTTTATTT
TAATGTTAAAGAGGAACTCATCAAAATGCTTAAAGATGCCGGATGTTGAAAAAGCTGAAAAGGAAGAATGCTAAGATGAT
TTCAGGTATTGAAAAGAAGAGGCAGAATTTAATTGGAGTCCAAGATGAACTGCTTCGGTTAGAGCCAGAGCTGAAACAAC
TACAAACAAAATATGATGAACTTGAGGAGAGAAAGTCTTCCCTTAAGAATGCACCATATTTCTTATCTAATTTAAAACAA
CTTTATCAAGATTATTCAGATGTTCAAGAGAAAAAAACAAAAGTAAAGGAAACGTATGATTCATCTAGCCTTCCAGCTCT
GTTATTTAACACAAGAACCATTTTGGGTGCTGAAACCCATCTGCAAAATATCAACCATCAGTTAGGGAAGCTCCTTGACC
AGGAA

Alignment

ORF - retro_mmur_836 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 93. %
• Parental protein coverage: 58.17 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  PAELVTPKKIGPLTAQPSVEKETLATENRPKTQEEGKMSCDTREKSRSESIDSDTSNILDIWCLEGKKTS
          PAELV.P.KIGPLTAQPSVEKETLATENRPKTQE..KMSCDTREKSRS...DSDTSNILDIWCLEGKKTS
Retrocopy PAELVIPTKIGPLTAQPSVEKETLATENRPKTQEKVKMSCDTREKSRSKTTDSDTSNILDIWCLEGKKTS

Parental  DLMELDIVLPTFEKTLLQYKQRIKSRICKEAINKFYFNVKEELIKMLKDA-RMLKKLKRKNAKMISGIEK
          D.MELDIVLPTFEKTLLQYKQRIKS.ICKEAINKFYFNVKEELIKMLKDA.RMLKKLKRKNAKMISGIEK
Retrocopy DIMELDIVLPTFEKTLLQYKQRIKSKICKEAINKFYFNVKEELIKMLKDA<RMLKKLKRKNAKMISGIEK

Parental  KRQRLIEVQDELLRLEPELKQLQTKYDELKERKSSLKNAAYFLSNLKQLYQDYSDVQEKKPKIKETYDSS
          KRQ.LI.VQDELLRLEPELKQLQTKYDEL.ERKSSLKNA.YFLSNLKQLYQDYSDVQEKK.K.KETYDSS
Retrocopy KRQNLIGVQDELLRLEPELKQLQTKYDELEERKSSLKNAPYFLSNLKQLYQDYSDVQEKKTKVKETYDSS

Parental  SLPALLFNTRTILGAETHLQNINHQLEKLLDQE
          SLPALLFNTRTILGAETHLQNINHQL.KLLDQE
Retrocopy SLPALLFNTRTILGAETHLQNINHQLGKLLDQE

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Microcebus murinus was not studied using RNA-Seq expression data.

ChIP-Seq

Microcebus murinus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mmur_836 retrocopy.

TSS

Microcebus murinus was not studied using FANTOM5 data.

Lab

retro_mmur_836 was not experimentally validated.

Homology

Retrocopy orthology:

Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 8 parental genes, and 8 retrocopies.

Species	Parental gene accession	Retrocopies number
Homo sapiens	ENSG00000151725	1 retrocopy	retro_hsap_1096,
Gorilla gorilla	ENSGGOG00000011892	1 retrocopy	retro_ggor_862,
Microcebus murinus	ENSMICG00000013084	1 retrocopy	retro_mmur_836 ,
Macaca mulatta	ENSMMUG00000012176	1 retrocopy	retro_mmul_850,
Nomascus leucogenys	ENSNLEG00000010967	1 retrocopy	retro_nleu_1628,
Oryctolagus cuniculus	ENSOCUG00000003903	1 retrocopy	retro_ocun_1174,
Pongo abelii	ENSPPYG00000015238	1 retrocopy	retro_pabe_979,
Pan troglodytes	ENSPTRG00000016643	1 retrocopy	retro_ptro_697,