RetrogeneDB ID: retro_mmur_860

Retrocopy location

• Organism: Mouse Lemur (Microcebus murinus)
• Coordinates: scaffold_11360:3155..4508(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: FUBP3
• Ensembl ID: ENSMICG00000015452
• Aliases: None
• Description: far upstream element (FUSE) binding protein 3 [Source:HGNC Symbol;Acc:4005]

Sequence

>retro_mmur_860
CTGGTGCAGGGGCAGAGCGCTCCGGTGGGCATGAAGGCCGAGGGCTTCGTGGACGCCTTGCACCGAGTCCGGCAGATTGC
TGCTAAAATTGATTCAATTCCTCACTTGAATAATTCCACACCTCTAGTGGACCCCTCTGTGTATGGATACGGAGTACAGA
AACGGCCCTTGGGTGATGGAGTAGGTAACCAGTTAGGGGCCTTGGTACATCAAAGGGCAGTAATAACAGAGGAATTCAAA
GTGCCTGGTAAAATGGTTGGATTTATTATCGGCAGGGGAGGTGAGCAGATTTCACGGATTCAAGCAGAATCTGGTTGCAA
AATTCAGATTGCTTCAGAGAGTTCTAGGATTCCAGAGAGGCCCTGTGTACTTACCGGAACCCCAGAAAGTATTGAACAAG
CCAAACGGCTCCTGGGGCAGATTGTGGGCCGCTGTCGGAATGGACCTGGCTTTCATAATGACATAGACGGCAACAGCACA
ATCCAGGAGATTCTTATTCCTGCGTCTAAAGTGGGTCTGGTCATCGGCAAAGGAGGGGAGACAATAAAGCAGTTGCAGGA
GCGGGCAGGTGTGAAGATGGTTATGATCCAGGATGGCCCGTTGCCCACAGGAGCAGACAAGCCTCTTCGCGTTACTGGAG
ACCCATTCAGAGTGCAGCAAGCAAGAGAAATGGTGCTGGAAATCATCCGGGGAAAAGACCAGGCTGACTTTCGAGGTGTA
CGTGGTGATTTCAACTCCCGAATGGGCGGAGGCAGTATAGAGGTGTCCGTGCCTAGGTTTGCTGTTGGGATTGTTATAGG
AAGAAACGGGGAAATGATCAAAAAGATCCAGAATGATGCCGGTGTGAGGATTCAGTTTAAACCAGATGATGGGATCAGTC
CAGAGAGGGCTGCACAGGTCGTGGGCCCTCTAGATTGGTGTCAGCATGCAGCACACATCATCAATGAGCTGATTCTTACA
GCCCAGGAAAGAGATGGCTTCGGAGGCCTGGCCGTCGCCAGAGGAAGAGGCCGCGGCCGTGGTGACTGGAGCGTGGGAAC
CCCTGGTGGCGTCCAAGAGATAGCATACACGGTGCCTGCAGATAAGTGTGGCCTCGTTATAGGCAAAGGGGGTGAGAACA
TCAAAAGCATAAATCAGCAGTCAGGAGCACATGTGGAGCTTCAGCGGAACCCCCCGCCCAACACCGACCCCAACCTGCGA
ATATTCACCATCAGGGGCGTTCCTCAGCGGATCGAGGTGGCCAGGCATCTCATAGATGAGAAAGTTGGTGGGACCAGTGT
TGGAGCACCTGGGGCCTTTGGACAGAGTCCCTTCAGCCAGCCTGCCGCACCTCATCAAAGTGGTCCTCCAGCC

Alignment

ORF - retro_mmur_860 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 93.35 %
• Parental protein coverage: 78.98 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  LVQGQSAPVGMKAEGFVDALHRVRQIAAKIDSIPHLNNSTPLVDPSVYGYGVQKRPLDDGXXXXXXXXXX
          LVQGQSAPVGMKAEGFVDALHRVRQIAAKIDSIPHLNNSTPLVDPSVYGYGVQKRPL.DG..........
Retrocopy LVQGQSAPVGMKAEGFVDALHRVRQIAAKIDSIPHLNNSTPLVDPSVYGYGVQKRPLGDGVGNQLGALVH

Parental  XXAVITEEFKVPDKMVGFIIGRGGEQISRIQAESGCKIQIASESSGIPERPCVLTGTPESIEQAKRLLGQ
          ..AVITEEFKVP.KMVGFIIGRGGEQISRIQAESGCKIQIASESS.IPERPCVLTGTPESIEQAKRLLGQ
Retrocopy QRAVITEEFKVPGKMVGFIIGRGGEQISRIQAESGCKIQIASESSRIPERPCVLTGTPESIEQAKRLLGQ

Parental  IVDRCRNGPGFHNDIDGNSTIQEILIPASKVGLVIGKGGETIKQLQERTGVKMVMIQDGPLPTGADKPLR
          IV.RCRNGPGFHNDIDGNSTIQEILIPASKVGLVIGKGGETIKQLQER.GVKMVMIQDGPLPTGADKPLR
Retrocopy IVGRCRNGPGFHNDIDGNSTIQEILIPASKVGLVIGKGGETIKQLQERAGVKMVMIQDGPLPTGADKPLR

Parental  ITGDPFKVQQAREMVLEIIREKDQADFRGVRGDFNSRMGGGSIEVSVPRFAVGIVIGRNGEMIKKIQNDA
          .TGDPF.VQQAREMVLEIIR.KDQADFRGVRGDFNSRMGGGSIEVSVPRFAVGIVIGRNGEMIKKIQNDA
Retrocopy VTGDPFRVQQAREMVLEIIRGKDQADFRGVRGDFNSRMGGGSIEVSVPRFAVGIVIGRNGEMIKKIQNDA

Parental  GVRIQFKPDDGISPERAAQVMGPPDRCQHAAHIINELILTAQERDGFGGLAVARGRGRGRGDWSVGTPGG
          GVRIQFKPDDGISPERAAQV.GP.D.CQHAAHIINELILTAQERDGFGGLAVARGRGRGRGDWSVGTPGG
Retrocopy GVRIQFKPDDGISPERAAQVVGPLDWCQHAAHIINELILTAQERDGFGGLAVARGRGRGRGDWSVGTPGG

Parental  VQEITYTVPADKCGLVIGKGGENIKSINQQSGAHVELQRNPPPNTDPNLRIFTIRGVPQQIEVARHLIDE
          VQEI.YTVPADKCGLVIGKGGENIKSINQQSGAHVELQRNPPPNTDPNLRIFTIRGVPQ.IEVARHLIDE
Retrocopy VQEIAYTVPADKCGLVIGKGGENIKSINQQSGAHVELQRNPPPNTDPNLRIFTIRGVPQRIEVARHLIDE

Parental  KVGGTSLGAPGAFGQSPFSQPAAPHQNTFPS
          KVGGTS.GAPGAFGQSPFSQPAAPHQ...P.
Retrocopy KVGGTSVGAPGAFGQSPFSQPAAPHQSGPPA

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Microcebus murinus was not studied using RNA-Seq expression data.

ChIP-Seq

Microcebus murinus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mmur_860 retrocopy.

TSS

Microcebus murinus was not studied using FANTOM5 data.

Lab

retro_mmur_860 was not experimentally validated.

Homology

Retrocopy orthology:

Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 2 parental genes, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Callithrix jacchus	ENSCJAG00000020542	1 retrocopy	retro_cjac_3887,
Microcebus murinus	ENSMICG00000015452	1 retrocopy	retro_mmur_860 ,