RetrogeneDB ID: | retro_mmus_1150 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 13:117085630..117085979(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Tcl1b2 | ||
Ensembl ID: | ENSMUSG00000060863 | ||
Aliases: | None | ||
Description: | T cell leukemia/lymphoma 1B, 2 [Source:MGI Symbol;Acc:MGI:1351609] |
Percent Identity: | 59.83 % |
Parental protein coverage: | 99.15 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MAAAGFYPPRLLPQVLISTGPGFYEDEHHRLWMVAKLETCSHSPYCNKIETCVTVHLWQMTR-YPQEPAP |
M..A...P.R.LP..L.ST..G.YE.E.H.LWMV.KL.TCSH.P.CN....C.TV.LWQMTR..P.EP.P | |
Retrocopy | MSCAVLSPRRSLPHILVSTRQGIYEGEYHKLWMVVKLKTCSHPPFCNRLGACITVYLWQMTR>FPHEPTP |
Parental | YNPMNYNFLPMTWRLASMNTYRGTDAMHWRLLNHSQVGDTVQLILML |
...MN.N.LP..WRL.SMNT..G.D.M.WRL..HSQV.DT.QLILML | |
Retrocopy | FSAMNFNCLPRMWRLDSMNTHWGIDTMLWRLMAHSQVSDTEQLILML |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 0 .26 RPM |
SRP007412_cerebellum | 0 .00 RPM | 0 .22 RPM |
SRP007412_heart | 0 .00 RPM | 0 .00 RPM |
SRP007412_kidney | 0 .00 RPM | 0 .00 RPM |
SRP007412_liver | 0 .00 RPM | 0 .00 RPM |
SRP007412_testis | 0 .00 RPM | 0 .32 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Homo sapiens | ENSG00000213231 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000013671 | 1 retrocopy | |
Mus musculus | ENSMUSG00000060863 | 2 retrocopies |
retro_mmus_1150 , retro_mmus_1605,
|
Nomascus leucogenys | ENSNLEG00000000495 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000006118 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000006694 | 1 retrocopy |