>retro_mmus_174
ATGGCAGAGCAGGTGACCCTAAGCCGGACCCAAGTGTGTGGGATCCTGAGGGAAGAGTTGTACCAAAATGATGCCTTCCA
CCAAGCTGATACACACATATTTATCATCATGGGTGCATCGGGTGACCTGGCCAAGAAGAAGATCTATCCCACCATCTGGT
GGCTGTTCCGGGATGGTCTTCTACCCAAAGAAACCTTCATTGTGGGCTATGCCCGCTCACAACTCACAGTGGATGACATC
CAAAAGCAGAGTGAGCCCTTCTTTAAGGCCACTCCAGAAGAAAGACCCAAGCTGGAGGAGTTCTTCACGCGTAACTCCTA
TGTAGTTGGCCAGTATGATGATCCAGCCTCCTATAAGCACCTCAACAGCTACATTAATGCCCTGCACCAGGGGATGCAGG
CCAACCATCTATTCTACCTGGCCTTGCCCCCCACAGTCTATGAAGCAGTCACCAAGAACATTCAAGAGACCTGCATGAGT
CAGACAGGCTTTAACCGCATCATAGTGGAGAAACCCTTCGGGAGAGACCTGCAGAGCTCCAATCAATTGTCTAACCACAT
CTCCTCTCTTTTCCGTGAAGACCAGATCTACCGCATTGACCACTACCTGGACAAAGAGATGGTCCAGAACCTCATGGTGC
TGAGGTTTGCTAACAGGATCTTTGGCCCTATCTGGAATGGAGACAACATTGCTTGTGTGATCCTCACATTTAAAGAGCCC
TTTGGTACTGAGGGTCGTGGGGGCTATTTTGATGAATTTGGGATCATCAGGGATGTTATGCAGAGCCACCTCCTGCAGAT
GTTGTGTCTGGTGGCCATGGAAAAGCCTGCTACCACAGATTCAGATGATGTCCGTAATGAGAAGGTCAAAGTGTTGAAAC
GTATCTCAGAGGTGGAAACTGACAATGTGATCCTTGGCCAGTATGTGGGGAACCCCAATGGAGAAGGAGAAGCTGCCAAT
GGATACTTAGATGACCCCACAGTACCCCGTGGGTCCACAACTGCCACCTTTGCTGCAGCTGTCCTCTATGTGAAGAATGA
ACGGTGGGATGGGGTACCCTTCATACTGCGCTGTGGCAAAGCCCTGAATGAACGCAAAGCTGAAGTGAGACTGCAATTCC
GAGATATACCAGGCGACATCTTCCACCAGAAGTGCAAGCGTAATGAGCTGGTCATCCGTATGCAGCCCAATGAGGCAGTA
TACACAACGATGATGACCAAGAAGCCTGGCATGTTCTTTAACCCTGAGGAGTCGGAGCTGGACCTAACTTATGGCAACAA
ATACAAGAATGTGAAGCTCCCTGGTGCCTATGAACGCCTCATCCTGGATGTCTTCTGTGGGTGCCAGATGCACTTTGTCC
GTACTGATGAACTCAGGGAAGGCTGGCGTATCTTCACACCACTGCTGCACAAGATTGAACGAGAAAAGCCCCAGCCCTTC
CCCTATGTATATGGCAGCCGTGGCCCCACAGAGGCAGATGAGCTGATGAGGAGAGTGGGCTTCCAGTACAAGGGTACCTA
CAAGGGTACTCACAAGCACTGA
ORF - retro_mmus_174 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
92.2 % |
Parental protein coverage: |
99.61 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | MAEQVALSRTQVCGILREELYQGDAFHQADTHIFIIMGASGDLAKKKIYPTIWWLFRDGLLPEDTFIVGY |
| MAEQV.LSRTQVCGILREELYQ.DAFHQADTHIFIIMGASGDLAKKKIYPTIWWLFRDGLLP..TFIVGY |
Retrocopy | MAEQVTLSRTQVCGILREELYQNDAFHQADTHIFIIMGASGDLAKKKIYPTIWWLFRDGLLPKETFIVGY |
|
Parental | ARSRLTVDDIRKQSEPFFKATPEERPKLEEFFARNSYVAGQYDDAASYKHLNSHMNALHQGMQANRLFYL |
| ARS.LTVDDI.KQSEPFFKATPEERPKLEEFF.RNSYV.GQYDD.ASYKHLNS..NALHQGMQAN.LFYL |
Retrocopy | ARSQLTVDDIQKQSEPFFKATPEERPKLEEFFTRNSYVVGQYDDPASYKHLNSYINALHQGMQANHLFYL |
|
Parental | ALPPTVYEAVTKNIQETCMSQTGWNRIIVEKPFGRDLQSSNQLSNHISSLFREDQIYRIDHYLGKEMVQN |
| ALPPTVYEAVTKNIQETCMSQTG.NRIIVEKPFGRDLQSSNQLSNHISSLFREDQIYRIDHYL.KEMVQN |
Retrocopy | ALPPTVYEAVTKNIQETCMSQTGFNRIIVEKPFGRDLQSSNQLSNHISSLFREDQIYRIDHYLDKEMVQN |
|
Parental | LMVLRFANRIFGPIWNRDNIACVILTFKEPFGTEGRGGYFDEFGIIRDVMQNHLLQMLCLVAMEKPATTG |
| LMVLRFANRIFGPIWN.DNIACVILTFKEPFGTEGRGGYFDEFGIIRDVMQ.HLLQMLCLVAMEKPATT. |
Retrocopy | LMVLRFANRIFGPIWNGDNIACVILTFKEPFGTEGRGGYFDEFGIIRDVMQSHLLQMLCLVAMEKPATTD |
|
Parental | SDDVRDEKVKVLKCISEVETDNVVLGQYVGNPNGEGEAANGYLDDPTVPHGSTTATFAAAVLYVENERWD |
| SDDVR.EKVKVLK.ISEVETDNV.LGQYVGNPNGEGEAANGYLDDPTVP.GSTTATFAAAVLYV.NERWD |
Retrocopy | SDDVRNEKVKVLKRISEVETDNVILGQYVGNPNGEGEAANGYLDDPTVPRGSTTATFAAAVLYVKNERWD |
|
Parental | GVPFILRCGKALNERKAEVRLQFRDVAGDIFHQQCKRNELVIRVQPNEAVYTKMMTKKPGMFFNPEESEL |
| GVPFILRCGKALNERKAEVRLQFRD..GDIFHQ.CKRNELVIR.QPNEAVYT.MMTKKPGMFFNPEESEL |
Retrocopy | GVPFILRCGKALNERKAEVRLQFRDIPGDIFHQKCKRNELVIRMQPNEAVYTTMMTKKPGMFFNPEESEL |
|
Parental | DLTYGNRYKNVKLPDAYERLILDVFCGSQMHFVRSDELREAWRIFTPLLHKIDREKPQPIPYVYGSRGPT |
| DLTYGN.YKNVKLP.AYERLILDVFCG.QMHFVR.DELRE.WRIFTPLLHKI.REKPQP.PYVYGSRGPT |
Retrocopy | DLTYGNKYKNVKLPGAYERLILDVFCGCQMHFVRTDELREGWRIFTPLLHKIEREKPQPFPYVYGSRGPT |
|
Parental | EADELMKRVGFQYEGTYKWVNPH |
| EADELM.RVGFQY.GTYK....H |
Retrocopy | EADELMRRVGFQYKGTYKGTHKH |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP007412_brain |
0 .00 RPM |
28 .32 RPM |
SRP007412_cerebellum |
0 .00 RPM |
45 .42 RPM |
SRP007412_heart |
0 .06 RPM |
6 .85 RPM |
SRP007412_kidney |
0 .00 RPM |
29 .51 RPM |
SRP007412_liver |
0 .00 RPM |
8 .98 RPM |
SRP007412_testis |
35 .31 RPM |
7 .73 RPM |
RNA Polymerase II actvity near the 5' end of retro_mmus_174 was not detected
1 EST(s) were mapped to retro_mmus_174 retrocopy
EST ID |
Start |
End |
Identity |
Match |
Mis-match |
Score |
CF105073 |
61809291 |
61809861 |
99.7 |
568 |
2 |
566 |
No TSS is located nearby retro_mmus_174 retrocopy 5' end.
retro_mmus_174 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_mmus_174 has 0 orthologous retrocopies within eutheria group .
Parental genes homology:
Parental genes homology involve
5 parental genes, and
6 retrocopies.