RetrogeneDB ID: | retro_mmus_204 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 1:141256567..141257158(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMUSG00000095238 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Gstm4 | ||
Ensembl ID: | ENSMUSG00000027890 | ||
Aliases: | Gstm4, 1110004G14Rik, GSTM7-7, Gstb-4, Gstb4 | ||
Description: | glutathione S-transferase, mu 4 [Source:MGI Symbol;Acc:MGI:95862] |
Percent Identity: | 83.21 % |
Parental protein coverage: | 60.09 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MPMTLGYWDIRGLAHAIRLLLEYTGSSYEEKRYTMGDAPDYDRSQWLSEKFKLGLDFPNLPYLIDGSHKI |
MPMTL.YWDI.GLAHAI.LLLEYT.S.YEEKRYTM.D.P.YDRSQWLSE.FKLGL.F.NLPYLIDGSHKI | |
Retrocopy | MPMTLCYWDIHGLAHAIWLLLEYTDSCYEEKRYTMRDPPKYDRSQWLSE-FKLGLEFFNLPYLIDGSHKI |
Parental | TQSNAILRYIARKHNLCGETEEEKIRVDILENQAMDVSNQLARVCYSPDFEKLKVEYLEQL |
TQSNAILRY.ARK.NLCGET.EEK.RV.IL.NQ.MDVS.QL.RVCYSPDFEKLK.EYL.QL | |
Retrocopy | TQSNAILRYTARKNNLCGET-EEKSRVEILKNQVMDVSSQLGRVCYSPDFEKLKAEYLVQL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 5 .12 RPM |
SRP007412_cerebellum | 0 .00 RPM | 3 .00 RPM |
SRP007412_heart | 0 .00 RPM | 7 .78 RPM |
SRP007412_kidney | 0 .00 RPM | 9 .16 RPM |
SRP007412_liver | 0 .00 RPM | 44 .70 RPM |
SRP007412_testis | 0 .00 RPM | 5 .72 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000004970 | 1 retrocopy | |
Bos taurus | ENSBTAG00000016472 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000019812 | 2 retrocopies | |
Equus caballus | ENSECAG00000024971 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000019630 | 2 retrocopies | |
Mustela putorius furo | ENSMPUG00000003658 | 1 retrocopy | |
Mus musculus | ENSMUSG00000004032 | 2 retrocopies | |
Mus musculus | ENSMUSG00000027890 | 1 retrocopy |
retro_mmus_204 ,
|
Mus musculus | ENSMUSG00000038155 | 1 retrocopy | |
Mus musculus | ENSMUSG00000058135 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000009559 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000007276 | 1 retrocopy |