RetrogeneDB ID:

retro_mmus_2361

Retrocopy
location
Organism:Mouse (Mus musculus)
Coordinates:4:74228196..74229429(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:ENSMUSG00000083767
Aliases:None
Status:KNOWN_PSEUDOGENE
Parental gene
information
Parental gene summary:
Parental gene symbol:Zfp384
Ensembl ID:ENSMUSG00000038346
Aliases:Zfp384, BB163993, C130073D16Rik, Ciz, NP, Nmp4
Description:zinc finger protein 384 [Source:MGI Symbol;Acc:MGI:2443203]


Retrocopy-Parental alignment summary:






>retro_mmus_2361
ATGGAAGAGCCTCACTTCAATTCTAACCCATACTTCTGGCCTTCTATCCCCACAGTCTCAGGGCAGATTGAAAACACTAT
GTTCATCAACAAGATGAAGGATCAGCTGTTGCCAGAGAAGGGCTGTGGACTGGCGCCACCTCACTATCCCACTTTGCTAA
CTGTCCCCGCCTCAGTGTCCCTGTCCTCTGGCATCAGCATGGACACAGAGACCAAGTCAGAACAGCTGACCCCACACAGT
CAGGCATCTGTTACCCAGAATATCACCGTGGTTTCTTTACCATCTACAGGACTCATGACTGCGGGAGTCTCCTGTTCTCA
GAGGTGGAGAAGAGAAGGGAGTCAATCAAGGGGTCCTGGTTTGGTAATCACATCCCCGTCAGGCTCTCTTGTGACCACAG
GCTCCGCAGCTCAGACTTTCCCTATTTCAGCTCCCATGATTGTCTCAGCTCTTCCCCCGGGCTCCCAAGCCCTACAGGTG
GTCCCTGACCTCTCCAAGAAGGTAGCATCAACCCTAACTGAGGAAGGAGGTGGAGGTGGTGGTGGTGGTGGCACTGTGGC
TCCTCCTACACCTCCTCTGGGCCGCAAGAAGAAGTGAATGCTGGAATCAGGGCTTCCTGAGATGAATGGCCCTTACGTCC
TTGCCCCTGGGGATGACGATGACCATCAGAAAGATGGCAAGACCTACAGGTGCCGGATGTGCTCCCTGACCTTCTACTCC
AAGTCGGAGATGCAGATCCACTCCAAGTCACACACCGAGACCAAGCCCCACAAGTGCCCGCACTGCTCCAAGACCTTCGC
CAACAGCTCCTACCTGGCCCAGCACATCCGGATCCACTCAGGGGCCAAGCCCTATAGTTGTAACTTCTGTGAGAAATCCT
TCCGCCAGCTCTCACATCTGCAGCAGCACACCCGAATCCACACTGGCGATAGACCATACAAATGTGCACACCCGGGCTGT
GAGAAGGCTTTCACACAACTCTCCAATCTGCAGTCTCACAGACAGCAGCACAACAAAGATAAACCCTTCAAGTGCCACAA
CTGTCACCGAGCATATACAGACGCAGCCTCTCTAGAGGCTCACTTATCTACACACACAGTGAAACCTGCCAAGGTTTATA
CCTGCACAATCTGTAGTCGGGCATATACATCAGAAACATACCTTATGAAACATATGCGCAAACACAACCCTCCTGATCTT
CAACAAGTGCAAGCAGCAGCAGCGGCAGCAGCA

ORF - retro_mmus_2361 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 94.66 %
Parental protein coverage: 78.78 %
Number of stop codons detected: 1
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalMEESHFNSNPYFWPSIPTVSGQIENTMFINKMKDQLLPEKGCGLAPPHYPTLLTVPASVSLSSGISMDTE
MEE.HFNSNPYFWPSIPTVSGQIENTMFINKMKDQLLPEKGCGLAPPHYPTLLTVPASVSLSSGISMDTE
RetrocopyMEEPHFNSNPYFWPSIPTVSGQIENTMFINKMKDQLLPEKGCGLAPPHYPTLLTVPASVSLSSGISMDTE
ParentalSKSEQLTPHSQASVTQNITVVPVPSTGLMTAGVSCSQRWRREGSQSRGPGLVITSPSGSLVTTASAAQTF
.KSEQLTPHSQASVTQNITVV..PSTGLMTAGVSCSQRWRREGSQSRGPGLVITSPSGSLVTT.SAAQTF
RetrocopyTKSEQLTPHSQASVTQNITVVSLPSTGLMTAGVSCSQRWRREGSQSRGPGLVITSPSGSLVTTGSAAQTF
ParentalPISAPMIVSALPPGSQALQVVPDLSKKVASTLTEEGGGGGGGGGTVAPPKPPRGRKKKRMLESGLPEMND
PISAPMIVSALPPGSQALQVVPDLSKKVASTLTE..........TVAPP.PP.GRKKK.MLESGLPEMN.
RetrocopyPISAPMIVSALPPGSQALQVVPDLSKKVASTLTEXXXXXXXXXXTVAPPTPPLGRKKK*MLESGLPEMNG
ParentalPYVLAPGDDDDHQKDGKTYRCRMCSLTFYSKSEMQIHSKSHTETKPHKCPHCSKTFANSSYLAQHIRIHS
PYVLAPGDDDDHQKDGKTYRCRMCSLTFYSKSEMQIHSKSHTETKPHKCPHCSKTFANSSYLAQHIRIHS
RetrocopyPYVLAPGDDDDHQKDGKTYRCRMCSLTFYSKSEMQIHSKSHTETKPHKCPHCSKTFANSSYLAQHIRIHS
ParentalGAKPYSCNFCEKSFRQLSHLQQHTRIHTGDRPYKCAHPGCEKAFTQLSNLQSHRRQHNKDKPFKCHNCHR
GAKPYSCNFCEKSFRQLSHLQQHTRIHTGDRPYKCAHPGCEKAFTQLSNLQSHR.QHNKDKPFKCHNCHR
RetrocopyGAKPYSCNFCEKSFRQLSHLQQHTRIHTGDRPYKCAHPGCEKAFTQLSNLQSHRQQHNKDKPFKCHNCHR
ParentalAYTDAASLEAHLSTHTVKHAKVYTCTICSRAYTSETYLMKHMRKHNPPDLQQQVQAAAAAAA
AYTDAASLEAHLSTHTVK.AKVYTCTICSRAYTSETYLMKHMRKHNPPDL.QQVQAAAAAAA
RetrocopyAYTDAASLEAHLSTHTVKPAKVYTCTICSRAYTSETYLMKHMRKHNPPDL-QQVQAAAAAAA

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






RNA-Seq - click to see more details

(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)

Expression validation based on RNA-Seq data:
Library Retrocopy expression Parental gene expression
SRP007412_brain 0 .02 RPM 31 .33 RPM
SRP007412_cerebellum 0 .13 RPM 43 .25 RPM
SRP007412_heart 0 .00 RPM 20 .92 RPM
SRP007412_kidney 0 .06 RPM 31 .99 RPM
SRP007412_liver 0 .00 RPM 23 .79 RPM
SRP007412_testis 0 .18 RPM 51 .69 RPM

ChIP-Seq - click to see more details

RNA Polymerase II actvity near the 5' end of retro_mmus_2361 was not detected

EST - click to see more details

No EST(s) were mapped for retro_mmus_2361 retrocopy.

TSS - click to see more details

No TSS is located nearby retro_mmus_2361 retrocopy 5' end.

Lab - click to see more details

retro_mmus_2361 was not experimentally validated.

Retrocopy orthology:
Retrocopy retro_mmus_2361 has 0 orthologous retrocopies within eutheria group .

Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species Parental gene accession Retrocopies number
Mus musculus ENSMUSG00000038346 1 retrocopy
retro_mmus_2361 ,


Copyright © RetrogeneDB 2014-2017