RetrogeneDB ID: | retro_mmus_256 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 3:85871666..85872164(-) | ||
Located in intron of: | ENSMUSG00000074513 | ||
Retrocopyinformation | Ensembl ID: | ENSMUSG00000031286 | |
Aliases: | Glt28d2, 4732486J07Rik, Glt28d1l | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Alg13 | ||
Ensembl ID: | ENSMUSG00000041718 | ||
Aliases: | Alg13, 2810046O15Rik, 4833435D08Rik, Glt28d1, MDS031, OTTMUSG00000018917 | ||
Description: | asparagine-linked glycosylation 13 [Source:MGI Symbol;Acc:MGI:1914824] |
Percent Identity: | 92.12 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MKRAFVTVGTTSFDELVARVVANDCVQILESLGYNHLVLQVGRGTVVPKPFRTESFTLDVYRYKDSLKED |
MKR.FVTVGTTSFD.L.ARVVA.D.VQIL..LGYN.LVLQ.GRGTVVP.PF.TESFTLDVYRYKDSLKED | |
Retrocopy | MKRVFVTVGTTSFDDLIARVVAHDSVQILKNLGYNQLVLQIGRGTVVPEPFSTESFTLDVYRYKDSLKED |
Parental | LQQADLVISHAGAGSCLESLEKGKPLVVVVNEKLMNNHQFELAKQLHKEGHLFYCTCSTLPGLLQSMDLS |
LQQADLVISHAGAGSCLESLEKGKPLVVVVNEKLMNNHQFELAKQLHKEGHLFYCTCS.LP.LLQSMDLS | |
Retrocopy | LQQADLVISHAGAGSCLESLEKGKPLVVVVNEKLMNNHQFELAKQLHKEGHLFYCTCSMLPELLQSMDLS |
Parental | TLKCYPPGQPEKFSAFLDKVVGLQK |
TLKCYPPGQPEKFSAFLDKVVGLQK | |
Retrocopy | TLKCYPPGQPEKFSAFLDKVVGLQK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .07 RPM | 7 .87 RPM |
SRP007412_cerebellum | 0 .13 RPM | 9 .34 RPM |
SRP007412_heart | 0 .37 RPM | 3 .64 RPM |
SRP007412_kidney | 0 .46 RPM | 4 .85 RPM |
SRP007412_liver | 0 .33 RPM | 4 .42 RPM |
SRP007412_testis | 0 .18 RPM | 33 .34 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Echinops telfairi | ENSETEG00000005613 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000005175 | 1 retrocopy | |
Mus musculus | ENSMUSG00000041718 | 1 retrocopy |
retro_mmus_256 ,
|
Oryctolagus cuniculus | ENSOCUG00000000232 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000031713 | 2 retrocopies | |
Tupaia belangeri | ENSTBEG00000010726 | 2 retrocopies |