>retro_mmus_874
CAACACCCCAGTGAGAACAAAATCCAGTCTCATAGCAGAGGAGAATACAATGTTTACAGCACCTTCCAGAGCCATGAGCC
AGAATTTGACTACTTGAAAAGCTTAGAAATAGAAGGGAAGATCAACAAAATTAGGTGGTTACCCCAGAAAAATGCTGCCC
AGTTTTTATTGTCTACCAATGATAAAACAATAAAATTATGGAAAATCAGTGAAAGAGACAAAAGACCAGAAGGCTATAAC
TTGAAAGAGGAAGATGGAAGATATAGAGATCCTACTACAGTCACTACGCTACGGGTGCCAGTATTTAGGCCCATGGATCT
AATGGTGGAAGCCAGTCCACAGAGAATATTTGCCAACACCCACACTTATCACATCAACTCAATTTCTATCAATAGTGATT
ATGAAACCTACTTATCAGCAGATGATTTGTGAATTATCTCTGGCATCTGGAAATTACAGACTGGAGTTTTAATATTGTGG
CTATCAAGCCTGGCAATATGGAAAAGCTCACAGAGGTGCTCACAGCTGCCGAATTTCACCCCAACAGCTGTAACACATTT
GTGTACAGCAGCAGTAAAGGAACCATTCGGTTATGTGACATGAGGGCATCTGCGCTCTGTGACAGGCATTCTAAACTGTT
TGAAGAACGTGAAGATCCCAGCAACAGGTCATTTTTTTTCTGAAATCATCTCCTCTATTTCTGATGTAAAATTCAGCCAT
AGT
ORF - retro_mmus_874 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
92.18 % |
Parental protein coverage: |
53.91 % |
Number of stop codons detected: |
1 |
Number of frameshifts detected |
2 |
Retrocopy - Parental Gene Alignment:
Parental | QQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDKTIKLWKIS |
| Q...ENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIE.KINKIRWLPQKNAAQFLLSTNDKTIKLWKIS |
Retrocopy | QHPSENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEGKINKIRWLPQKNAAQFLLSTNDKTIKLWKIS |
|
Parental | ERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINSDYETYLSA |
| ERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASP.RIFAN.HTYHINSISINSDYETYLSA |
Retrocopy | ERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPQRIFANTHTYHINSISINSDYETYLSA |
|
Parental | DDLRI-NLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDR |
| DDL.I..LWHLEITD.SFNIV.IKP.NME.LTEV.TAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDR |
Retrocopy | DDL*I<YLWHLEITDWSFNIVAIKPGNMEKLTEVLTAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDR |
|
Parental | HSKLFEEPEDPSNRS-FFSEIISSISDVKFSHS |
| HSKLFEE.EDPSNRS....EIISSISDVKFSHS |
Retrocopy | HSKLFEEREDPSNRS>XXXEIISSISDVKFSHS |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP007412_brain |
0 .61 RPM |
80 .67 RPM |
SRP007412_cerebellum |
0 .43 RPM |
52 .37 RPM |
SRP007412_heart |
0 .53 RPM |
41 .50 RPM |
SRP007412_kidney |
0 .54 RPM |
35 .46 RPM |
SRP007412_liver |
0 .36 RPM |
19 .63 RPM |
SRP007412_testis |
0 .37 RPM |
34 .94 RPM |
RNA Polymerase II actvity near the 5' end of retro_mmus_874 was not detected
No EST(s) were mapped for retro_mmus_874 retrocopy.
No TSS is located nearby retro_mmus_874 retrocopy 5' end.
retro_mmus_874 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_mmus_874 has 0 orthologous retrocopies within eutheria group .
Parental genes homology:
Parental genes homology involve
3 parental genes, and
3 retrocopies.