RetrogeneDB ID: retro_mputfur_1029

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL896997.1:5635749..5636147(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: 2610318N02Rik
• Ensembl ID: ENSMPUG00000003165
• Aliases: None
• Description: RIKEN cDNA 2610318N02 gene [Source:MGI Symbol;Acc:MGI:1917708]

Sequence

>retro_mputfur_1029
CATCTACTGCAACACACCCTTGGCCTCTTCCCTCTGCTGCCTGACAGGTCTGTGGTGAAGTTATAAGTTGTAAGGTCTGA
ACTGAAATTAAACTGGGCTGGCCTGTCACTGAACCCAAAAAGCCACATGGTTAATTTGACCGCCTTTGTCCTCAACTTTG
GAGGCCTCATTTCTCAAACCTGGTTGGAAATGGTGAGCACAAGCCCCATTGCCCTGGCTCCCTAGCTCCTGGGCCTGATA
GGATTTCCCCAAAATGGAGAAGTTGCCACCCCTTCCTCTGAAGGCTTCCATCTTCACCACCCCATGTCTTGCTCAAGTTC
CAGACTGTGCAGAGACCCAAGGATGACTCTGAAAAAGACCTTACCAGCACAGAGTCTATGCCCCAACAAAAGGGGCCC

Alignment

ORF - retro_mputfur_1029 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 59.56 %
• Parental protein coverage: 62.44 %
• Number of stop codons detected: 3
• Number of frameshifts detected: 3

Retrocopy - Parental Gene Alignment:

Parental  YTMPRVFGPFPPLPSKSMEKLEVARSEVKLNWAGLSSNPKRHMVDLTPLVLNPGGF-HFSYLAGNSAHKL
          .......G.FP.LP..S..KL.V.RSE.KLNWAGLS.NPK.HMV.LT..VLN.GG..HFS.L.GN..HK.
Retrocopy HLLQHTLGLFPLLPDRSVVKL*VVRSELKLNWAGLSLNPKSHMVNLTAFVLNFGGL<HFSNLVGNGEHKP

Parental  HCPG-FPWTSACSGSPKTEETPLSPVKASIFTPP-VLLKFQPVPRPKDDSENDPSSTESVPPKRGP
          HCPG..P...A....PK.E..P..P.KASIFT.P.VLLKFQ.V.RPKDDSE.D..STES.P...GP
Retrocopy HCPG<LPSSWA**DFPKMEKLPPLPLKASIFTTP>VLLKFQTVQRPKDDSEKDLTSTESMPQQKGP

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_1029 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_1029 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 3 retrocopies.

Species	Parental gene accession	Retrocopies number
Ailuropoda melanoleuca	ENSAMEG00000008805	1 retrocopy	retro_amel_579,
Mustela putorius furo	ENSMPUG00000003165	1 retrocopy	retro_mputfur_1029 ,
Mus musculus	ENSMUSG00000049916	1 retrocopy	retro_mmus_1731,