RetrogeneDB ID: retro_mputfur_111

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL896907.1:25975144..25975897(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMPUG00000019305
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMPUG00000013815
• Aliases: None
• Description: None

Sequence

>retro_mputfur_111
ATGGCTGCAGGAACCAGCAATTATTGGGAAGATCTCAGGAAACAGGCTCGACAGCTGGAAAATGAACTTGACCTGAAACT
AGTTTCCTTCAGTAAACTATGTACAAGTTACAGTCACAGCAGTGCCCGAGATGGAAGACGCGACAGGTATAGCTCTGACA
CAACACCCCTTTTAAATGGATCAAGCCAAGACAGAATGTTTGAAACAATGGCAATTGAGATTGAACAGCTTTTGGCAAGG
CTTACAGGAGTAAATGATAAAATGGCAGAATATACCAACAGTGCAGGTGTCCCATCTTTGAATGCTGCACTGATGCATAC
ATTACAGAGACATAGAGATATTTTGCAGGATTATACACATGAATTTCATAAAACCAAAGCAAACTTTATGGCAATACGGG
AAAGGGAGAATCTCATGGGATCAGTACGAAAGGATATTGAGTCATATAAAAGTGGGTCTGGAGTAAACAACAGAAGAACT
GAACTATTTTTGAAAGAACATGATCACCTTCGAAACTCAGATCGTCTGATAGAAGAGACAATAAGCATTGCTATGGCAAC
AAAAGAAAATATGACTTCCCAAAGAGGAATGTTGAAGTCGATTCAGAGCAAAATGAATACTTTGGCCAATCGTTTTCCTG
CTGTGAACAGCCTGATCCAGCGGATCAATCTTAGGAAGCGGCGAGACTCCCTCATCCTGGGTGGGGTCATTGGCATCTGT
ACCATCCTGTTGCTGCTGTATGCTTTCCATTGA

Alignment

ORF - retro_mputfur_111 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 100. %
• Parental protein coverage: 100. %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MAAGTSNYWEDLRKQARQLENELDLKLVSFSKLCTSYSHSSARDGRRDRYSSDTTPLLNGSSQDRMFETM
          MAAGTSNYWEDLRKQARQLENELDLKLVSFSKLCTSYSHSSARDGRRDRYSSDTTPLLNGSSQDRMFETM
Retrocopy MAAGTSNYWEDLRKQARQLENELDLKLVSFSKLCTSYSHSSARDGRRDRYSSDTTPLLNGSSQDRMFETM

Parental  AIEIEQLLARLTGVNDKMAEYTNSAGVPSLNAALMHTLQRHRDILQDYTHEFHKTKANFMAIRERENLMG
          AIEIEQLLARLTGVNDKMAEYTNSAGVPSLNAALMHTLQRHRDILQDYTHEFHKTKANFMAIRERENLMG
Retrocopy AIEIEQLLARLTGVNDKMAEYTNSAGVPSLNAALMHTLQRHRDILQDYTHEFHKTKANFMAIRERENLMG

Parental  SVRKDIESYKSGSGVNNRRTELFLKEHDHLRNSDRLIEETISIAMATKENMTSQRGMLKSIQSKMNTLAN
          SVRKDIESYKSGSGVNNRRTELFLKEHDHLRNSDRLIEETISIAMATKENMTSQRGMLKSIQSKMNTLAN
Retrocopy SVRKDIESYKSGSGVNNRRTELFLKEHDHLRNSDRLIEETISIAMATKENMTSQRGMLKSIQSKMNTLAN

Parental  RFPAVNSLIQRINLRKRRDSLILGGVIGICTILLLLYAFH
          RFPAVNSLIQRINLRKRRDSLILGGVIGICTILLLLYAFH
Retrocopy RFPAVNSLIQRINLRKRRDSLILGGVIGICTILLLLYAFH

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_111 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_111 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Mustela putorius furo	ENSMPUG00000013815	1 retrocopy	retro_mputfur_111 ,