RetrogeneDB ID: retro_mputfur_1120

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL897020.1:3087317..3087737(-)
• Located in intron of: ENSMPUG00000016725

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: COMMD1
• Ensembl ID: ENSMPUG00000005842
• Aliases: None
• Description: copper metabolism (Murr1) domain containing 1 [Source:HGNC Symbol;Acc:23024]

Sequence

>retro_mputfur_1120
GGGGAACCAGCCATCACAGAGGAGCTGCTTTGGGGCCAGCTCTTCCCAGGGGTGTCACCTGAGGAGTCCTGCCCCTTTCT
GGCAAAGAGGAGGGGGTTTCTTAAGTCTATTGCTTCTACAGACATGGATTTCAAACAATGGAGGCATTCTTGGCTGCTCG
AACCAAAAAGCAATGTGGGAGGTATCACAACTGACTGAGCTGCCATCATTTCCGAATTCTGGAAGAGGCATAAGACAAAA
ATTCGAGACAGCCTCATGAACCAGAACTGTTGGGACAATGGGCTTCGTGACCTGAGGTACAGAGTGGATGGCAGATCCCA
GTCAAGGCACTCAACTCAAATATACACCCCTCTTGCCATAATGGGGCTGGAAACAGGGCAAAGTGGACAGGAATCTGAAT
CTCTTTGTTTGGCATTTGAC

Alignment

ORF - retro_mputfur_1120 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 65. %
• Parental protein coverage: 73.94 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  GHQGITEELLRSQLYPEVSLEEFRPFLAKMRGILKSIASADMDFNQLE-AFLTAQTKKQGGISSDQAAVI
          G...ITEELL..QL.P.VS.EE..PFLAK.RG.LKSIAS.DMDF.Q.....L.......GGI..D.AA.I
Retrocopy GEPAITEELLWGQLFPGVSPEESCPFLAKRRGFLKSIASTDMDFKQWRHSWLLEPKSNVGGITTD*AAII

Parental  SKFWKSHKIKIRESLMNQSRWDSGLRGLSWRVDGKSQSRHSAQIHTPVAIMELEIGKSGQESEFLCLEFD
          S.FWK.HK.KIR.SLMNQ..WD.GLR.L..RVDG.SQSRHS.QI.TP.AIM.LE.G.SGQESE.LCL.FD
Retrocopy SEFWKRHKTKIRDSLMNQNCWDNGLRDLRYRVDGRSQSRHSTQIYTPLAIMGLETGQSGQESESLCLAFD

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_1120 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_1120 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 5 parental genes, and 5 retrocopies.

Species	Parental gene accession	Retrocopies number
Canis familiaris	ENSCAFG00000003090	1 retrocopy	retro_cfam_343,
Cavia porcellus	ENSCPOG00000002088	1 retrocopy	retro_cpor_482,
Mustela putorius furo	ENSMPUG00000005842	1 retrocopy	retro_mputfur_1120 ,
Ictidomys tridecemlineatus	ENSSTOG00000015062	1 retrocopy	retro_itri_562,
Tarsius syrichta	ENSTSYG00000000812	1 retrocopy	retro_tsyr_88,