RetrogeneDB ID: retro_mputfur_1202

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL897041.1:1634641..1635087(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: FHL3
• Ensembl ID: ENSMPUG00000014497
• Aliases: None
• Description: four and a half LIM domains 3 [Source:HGNC Symbol;Acc:3704]

Sequence

>retro_mputfur_1202
CTCACTCACAGCCACCACGAGGGAGGCTTGTGTGCAAAATGCGAGTCCCTGGAAGGCCACAAGTACATCCAGAAAGATGA
TGGCCCGTCCCCTGTGTCCTGCTATGAAAACACTTCACTACCACCTGTGCTGAGTGTCAGCAACTTATGGGGCTGACTCA
ATGGAGCCTTTTTATGAAGACTGCCACGTCCATGAGGGCTGCTGCTGCTGTCCTCGCTCCCTGGCCACTGAGCCCTTCAC
TTGTCAGGATAATGAGCTGCTCTGTAATGCTTGCTACTGCAGTGACTTCTCCTCCCAGTGCTCTGCCTATGGGAAGACCT
CATGTCTGGGTCCCAGAAGCTGGAATACAGAGGCCAGAAGTGGCATGAGCACTGTTTCCTGTGCAGTGGCTGTAAGCAGC
TGCTGGGCTCCCATTCTTCATGCCCAAAAGGCATGCCCAGTATTGT

Alignment

ORF - retro_mputfur_1202 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 67.72 %
• Parental protein coverage: 51.16 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 4

Retrocopy - Parental Gene Alignment:

Parental  LTATMSEAFDCAKCSESLYGRKYIQTDDGPYCVPCYDST-FANTCAECQQLIG-HDSRELFYEDRHFHEG
          LT....E...CAKC.ESL.G.KYIQ.DDGP..V.CY..T.F..TCAECQQL.G..DS.E.FYED.H.HEG
Retrocopy LTHSHHEGGLCAKC-ESLEGHKYIQKDDGPSPVSCYENT<FTTTCAECQQLMG<ADSMEPFYEDCHVHEG

Parental  CFRCCRCKRSLADEPFTCQDNELLCNDCYCSAFSSQCSACGET-VMPGSRKLEYGGQTWHEHCFLCSGCE
          ...CC.C.RSLA.EPFTCQDNELLCN.CYCS.FSSQCSA.G.T..M.GS.KLEY.GQ.WHEHCFLCSGC.
Retrocopy ---CCCCPRSLATEPFTCQDNELLCNACYCSDFSSQCSAYGKT<LMSGSQKLEYRGQKWHEHCFLCSGCK

Parental  QPLGSRS-FVPDKGAHYC
          Q.LGS.S.F.P...A.YC
Retrocopy QLLGSHS<FMPKRHAQYC

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_1202 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_1202 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 3 retrocopies.

Species	Parental gene accession	Retrocopies number
Felis catus	ENSFCAG00000007237	1 retrocopy	retro_fcat_1342,
Mustela putorius furo	ENSMPUG00000003994	1 retrocopy	retro_mputfur_1217,
Mustela putorius furo	ENSMPUG00000014497	1 retrocopy	retro_mputfur_1202 ,