>retro_mputfur_1219
CTCCAGAAAGCAATAGATCTTGCTGGCAAAGCAGCTCAGGAAGACAAAGCCGGGAACTATGAGGAAGCGCTTCAACTCTA
CCAACATGCCGTTCAGTATTTTCTTCATGTAGTTAAATATGAAGCGCAGGGCGATAAAGCCAAGCGGAGTATCAGGGCAA
AGTGTACAGAATATCTCGATAGAGCAGAAGAACTAAAGGAGTAGCTGAAAAAGAAAGAGAAAAATCCACAGAAACCAGTG
AAAGAGGGACAGCCGAGTCCAGCTGACGAGAAGGGGAATGACAGTGATGAGGAAGGAGAATCTCATGATCCTGAAAAAAA
GAAACTACAGAATCAACTTCAAGGTGCCATTGTTATAGAGCGACCAAATGTGAGATGGAGTGATGTTGCTGGCCTCGAAG
GAGCCAAAGAGGCACTTAAAGAGGCTGTGACACTGCCTATTAAATTCCCTCATCTTTTTACAGGCAAGAGAACACCTTGG
AGGGGAATTCTGTTATTTGGGCCACCTGGAACAGGAAAGTCCCATTTAGCCAAAGCTGTAGCAACAGAAGCAAACAACTC
AACATTTTTTTTCAATATCTTCCTCTGACCTTGTCTCTAAGTGGCTAGGTGAAAGTGAAAGGCTAGTTATGGACATT
ORF - retro_mputfur_1219 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
92.02 % |
Parental protein coverage: |
50.24 % |
Number of stop codons detected: |
1 |
Number of frameshifts detected |
1 |
Retrocopy - Parental Gene Alignment:
Parental | LEKAIDLAGKAAQEDKAGNYEEALQLYQHAVQYFLHVVKYEAQGDKAKQSIRAKCTEYLDRAEKLKEYLK |
| L.KAIDLAGKAAQEDKAGNYEEALQLYQHAVQYFLHVVKYEAQGDKAK.SIRAKCTEYLDRAE.LKE.LK |
Retrocopy | LQKAIDLAGKAAQEDKAGNYEEALQLYQHAVQYFLHVVKYEAQGDKAKRSIRAKCTEYLDRAEELKE*LK |
|
Parental | KKEKNPQKPVKEGQPSPADEKGNDSDGEGESDDPEKKKLQNQLQGAIVIERPNVKWSDVAGLEGAKEALK |
| KKEKNPQKPVKEGQPSPADEKGNDSD.EGES.DPEKKKLQNQLQGAIVIERPNV.WSDVAGLEGAKEALK |
Retrocopy | KKEKNPQKPVKEGQPSPADEKGNDSDEEGESHDPEKKKLQNQLQGAIVIERPNVRWSDVAGLEGAKEALK |
|
Parental | EAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNST-FFSISSSDLVSKWLGESEKLV |
| EAV.LPIKFPHLFTGKRTPWRGILLFGPPGTGKS.LAKAVATEANNST....ISSSDLVSKWLGESE.LV |
Retrocopy | EAVTLPIKFPHLFTGKRTPWRGILLFGPPGTGKSHLAKAVATEANNST>XXXISSSDLVSKWLGESERLV |
|
Parental | KNL |
| ... |
Retrocopy | MDI |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Mustela putorius furo was not studied using RNA-Seq expression data.
Mustela putorius furo was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_mputfur_1219 retrocopy.
Mustela putorius furo was not studied using FANTOM5 data.
retro_mputfur_1219 was not experimentally validated.
Retrocopy orthology:
Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
2 parental genes, and
2 retrocopies.