RetrogeneDB ID: retro_mputfur_1264

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL897061.1:1698311..1698840(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: ABHD5
• Ensembl ID: ENSMPUG00000012931
• Aliases: None
• Description: abhydrolase domain containing 5 [Source:HGNC Symbol;Acc:21396]

Sequence

>retro_mputfur_1264
CTGACTTTTGGAGATCTTTGCACTGATAAACCCATCTATGCTTTTGACCTGTCGGGCTTTGGACAAAGTAGTAGGCTAGG
TTTGACAATGATGCGGAAGTGGAGAATCAATTTGTGGAATCCACTGAAGAATGGAGATGTGCCCTAGGATTGGACAAAGT
GATCTTGCTTGGGCACAACTTGGGTGGGTTCTTGGCTGCTGCTTACTCACTGAAGTACCTGTCAAGGGTTAATCATCTCA
TTTTAGTGGAGCCTTGGGGTTTTCCTGAGCCACTAGAACTTGCTGATCAAGACAGACCAATCCCAGTGTGGATCAGAGCC
TTGGGAGAAGCACTGACTCCCTTTAATCCTTTAGCTGGCCTCAGAATTACAGGACCCTTTGGCTTAAGTCTAGTGCAGTG
TTTAAGGCCTGATTTCAAATGGAAGTATTCTTCAATGTTTGAAGATGACACCATGACAGAATACATCTACCACGTAATGT
GCAGACTCCAAGTGGTGAGACAGCATTCAAAAATATGACTCTTCCTTAT

Alignment

ORF - retro_mputfur_1264 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 86.67 %
• Parental protein coverage: 51. %
• Number of stop codons detected: 0
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  LNFGDLCTGRPVYAFDLLGFGRSSR-PRFDSDAEEVENQFVESIEEWRCALGLDKMILLGHNLGGFLAAA
          L.FGDLCT..P.YAFDL.GFG.SSR..RFD.DAE.VENQFVES.EEWRCALGLDK.ILLGHNLGGFLAAA
Retrocopy LTFGDLCTDKPIYAFDLSGFGQSSR<ARFDNDAE-VENQFVESTEEWRCALGLDKVILLGHNLGGFLAAA

Parental  YSLKYPSRVNHLILVEPWGFPERPDLADQDRPIPVWIRALGAALTPFNPLAGLRIAGPFGLSLVQRLRPD
          YSLKY.SRVNHLILVEPWGFPE...LADQDRPIPVWIRALG.ALTPFNPLAGLRI.GPFGLSLVQ.LRPD
Retrocopy YSLKYLSRVNHLILVEPWGFPEPLELADQDRPIPVWIRALGEALTPFNPLAGLRITGPFGLSLVQCLRPD

Parental  FKRKYSSMFEDDTVTEYIYHC-NVQTPSGETAFKNMTIPY
          FK.KYSSMFEDDT.TEYIYH..NVQTPSGETAFKNMT.PY
Retrocopy FKWKYSSMFEDDTMTEYIYHV<NVQTPSGETAFKNMTLPY

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_1264 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_1264 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 3 retrocopies.

Species	Parental gene accession	Retrocopies number
Echinops telfairi	ENSETEG00000012926	1 retrocopy	retro_etel_2204,
Monodelphis domestica	ENSMODG00000015241	1 retrocopy	retro_mdom_303,
Mustela putorius furo	ENSMPUG00000012931	1 retrocopy	retro_mputfur_1264 ,