>retro_mputfur_1297
ATGGATGACATTTTCACCCAGTGGTGGGAGGGCAATGTGGTGGCCATTCACCTGTAAGCTGGACAACACGAAAACAGCCT
CAACCAGGAGATGATCATGGCTTCTCCCCCTTGCCCTGGCCTGCCAAGAGGGCTGTTGTCCTGTGGTTGAGATGCTGATC
ATGTGGGGAACATGAATCAATGTGATGAACCATGGTGATGAACCCCCTAGCACCTGGCAGCTGGTCCCAGACACCGTGAT
ATTGTGCAGAAGCTGCAGCAGTATAAAGCTGACATCAATGCAGTGAATGTACATAGAAATGTGCCCCTGCATTATGCCTG
TTTTTTTGGGCCAACATCGGGTTGCAGAGGACATGGTGGCTAATGGGGCTCTTTGTCAGCATTTATAACAAGTATGGAGA
GATGTCCAAGGACAAAGCCAAGGACCTCTGAGGGATCTCTTCTGAGAGCAGGCAGAGAAGATGGGCCACAACTTTAACCA
TATTTCATACAAGGACACATTTTGGAAAATAACCACCCGCATTTGGCCCGAGAATGGGACTCTGCACAAACATGCTGGCA
CTGACTTCAAACAGCTCAACTTTCTGGCAAAATTCAATGACCATCACTCTGGAGAGCTATGTAAGGGCTGTTGACAGGTC
AATGACATTGTCATGAAGATGCTAAAGGTTTGAAACTGGAGTACAAGGAAGAGCAGGGACTTTAATGAGGAATGTCCCCA
TCTAAGGATTTTCTCGCATCCAGATGTTCTCCCTGTGCTAGGTGCTCGTCAGTCTCTACCTTCTCCTCAC
ORF - retro_mputfur_1297 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
72.96 % |
Parental protein coverage: |
58.41 % |
Number of stop codons detected: |
6 |
Number of frameshifts detected |
6 |
Retrocopy - Parental Gene Alignment:
Parental | MDDIFTQCREGNAVAVRLWLDNTENDLNQ-GDDHGFSPLHW-ACREGRSAVVEMLIMRGARINVMNRGDD |
| MDDIFTQ..EGN.VA..L.....EN.LNQ.GDDHGFSPL.W.AC.EG...VVEMLIM.G..INVMN.GD. |
Retrocopy | MDDIFTQWWEGNVVAIHL*AGQHENSLNQ<GDDHGFSPLPW<ACQEGCCPVVEMLIMWGT*INVMNHGDE |
|
Parental | -TPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWG-QDQVAEDLVANGAL-VSICNKYGEM |
| .TP.HLAA...HRDIVQKL.QYKADINAVN.H.NVPLHYACF.G.Q..VAED.VANGAL.VSI.NKYGEM |
Retrocopy | <TP*HLAAGPRHRDIVQKLQQYKADINAVNVHRNVPLHYACFFG>QHRVAEDMVANGAL>VSIYNKYGEM |
|
Parental | PVDKAK-APLRELLRERAEKMGQNLNRIPYKDTFWKGTTRTRPRNGTLNKHSGIDYKQLNFLAKLNENHS |
| ..DKAK..PLR.L..E.AEKMG.N.N.I.YKDTFWK.TTR..P.NGTL.KH.G.D.KQLNFLAK.N..HS |
Retrocopy | SKDKAK<GPLRDLF*EQAEKMGHNFNHISYKDTFWKITTRIWPENGTLHKHAGTDFKQLNFLAKFNDHHS |
|
Parental | GELWKGCWQGNDIVVKVLKVRDWSTRKSRDFNEECPRLRIFSHPNVLPVLGACQSPPAPH |
| GEL.KGC.Q.NDIV.K.LKV..WSTRKSRDFNEECP.LRIFSHP.VLPVLGA.QS.P.PH |
Retrocopy | GELCKGC*QVNDIVMKMLKV*NWSTRKSRDFNEECPHLRIFSHPDVLPVLGARQSLPSPH |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Mustela putorius furo was not studied using RNA-Seq expression data.
Mustela putorius furo was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_mputfur_1297 retrocopy.
Mustela putorius furo was not studied using FANTOM5 data.
retro_mputfur_1297 was not experimentally validated.
Retrocopy orthology:
Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
3 parental genes, and
3 retrocopies.