RetrogeneDB ID: retro_mputfur_13

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL896900.1:9371266..9374524(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMPUG00000019635
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMPUG00000009309
• Aliases: None
• Description: None

Sequence

>retro_mputfur_13
ATGGATAACCCGGAAAATGTCTTTCAAATGTTTGAAGCCCATATGCAGAGCTACAAGGGCGATGACCCACTTGGTGAATG
GGAAAGTTACATGCAGTGGGTAGAAGAGAACTTTCCTGAAAATAAGGAATACTTGACAACTTTATTAGAACATTTAATGA
AAGAGTTTTTGGATAAGAAGAAATACCACAATGACCCAAGATTCATAAATTGCTGTTTAAAATTTGCTCAGTACAACAGT
GATCTTCATCAGTTCTTTGAGTTTCTTTACAACCACGGGATTGGAACCTTGTCATCTCCTCTCTACGTAGCCTGGGCAGG
GCATCTGGAAGGCCAGGGAGAGCTGCAGCATGCCAGCGCTGTTCTTCGGAGAGGACTTCAAAACCAGGCCGAACCAAGAG
AGCTGCTGCAACAACACTACAGGTTATTCCAGGCACGCCTCACTGAAACGCATTTGCCAACTCAAGCTAGGACTTCAGAA
CCTCTCCATAATGCTCAGATTTTAAACCAAATGATGACTTCAAAATCAAATCCAGGAAATAACTCAGCTTGCATGTCTAA
GAATCAGGGTTCAGAAGTTTCTGGGGTAGTATCTACAGTTGGTGATAAAGAGTCAAAAAAGGAACAAAGGGTGATCGTGA
TTTCCAAATCAGAATATTCTGCACAAGCATCTTCAGCAGCTAGAGCTGACATTCAGCAGGTTGTCATGTATTGCAAGGAG
AAGCTTATTCGCCGAGAATCAGAGTTTTCCTTTGAAGAGCTGAGAGCCCAGAAATACAATCAACGGAGAAAGCATGAACA
GTGGGTGAATGAAGATAGACGTTATATGAAAAGAAAAGAAGCAAATGCTTTTGAAGAACAACTATTAAAACAGAAGATGG
ATGAACTGCATAAGAAGTTGCATCAGGTGGTGGAGACATTCCAGGAGAACTTGCCTGTTTTCCAGGAAAGGTCTGAGTTT
AATCCAGCATGTATGGGACCAAGTGTAAGCTCCCAGGAGGACCTGAGAGCCCCGTCTCTTCCAGCTATCAATCATCAGAC
CTCAAAGAACATGGGAGAGAAACCCAGAGAGACAACTCCTGTTGTTCCTCCTATGGCAAATGCTATCACTGCCACTTTGG
TGTCCCCGGCCATCAGTCAGAGTGTATCTCCTCCTGGTCCTTTGTCAGCCCAGTCAGACACAGACTCCATGTTTGCAGTG
ACCAGAAAAGATGACAGATGTGTGACTAAAAGTACTCGTGAATTCAAGCCACAGAGTGAAGCCGAGATAAAAGAAGGATC
TGAAACACATAAGGTTGTTAACACAGGCTTTTTTCACACAACTCCAAACACATCGTTGGGAATGGTTCAGGCGACCCCAT
CCAGGGTGCAGCCGTCACCCACCGTGCACACAAAGGAAGCATTAGGTTTCATCATGAATATGTTTCAGGCTCCTACACTT
CCTGATATTTCTGATGACAAAGATGAATGGCCATCTCTGGACCAAAATGAAGATGCTTTTCAGGCCCAGTTTCAAAAAAA
TGCAAGGTCTTCTGGGGCTTGGGGAGTCAATAAGATCATCTCTTCTTTGACATCTACTTTTCCTGTGTTCGAAGATGGAA
ACAAAGAAAATTATGGATTACCACAGCCTAAAAATAAACCTGCAGGAGCCAGGACATTTGAAGAACGCTCTGTAAGCAGA
TTTCCTTCAAAACCCAATGAAGTACCTCACGCTGAAGAGATTTTGGATGACTCAACCGTCTGGGGTGTCTGCTGCAATAG
AACCCTGGCGCCCAGTCCGAAGAGCCCAGGACACTTCACGGCTGCCGCACAGCTTGCATCCACACCTTTCCACAAACCAC
CCGTGGACACAGGGCCTTCTCTGGAGGATAAAGAAAATGTGGTTGCAAAAGAGTACGTCCATGTGACTCTGGATTCTTGT
GAAGAAAACATGGGAGAACCCTCAAAAGACAGAAAGTTCAGCTCAATTCAAGAGAAAACCCCAGAACCAGCATTCCCTGC
AGACATATCTTCAGCATCCTTGCTCCGTGGGAGCCAGCCTGCAGCAGGTGGTGTGCTGGCCAGTGAGGTGGCACAGAGCC
TCGAGGCTTGTAAACTCACAGACACTAACCTCACCGTCACAGAAGATCCACCCGGCGCTGGTGCCGGGCACCAAGCAGAA
TGGACGCAGACTAGTTCATTTGAGAATGTCAACGCTTCAAACTTGACTGTTGAGAATCCATGGGATGATACATTGATTCT
CAAACTTTTATCTGGGCTTTCTAAGCCAGTGAGATCCTATCCAAATACTTATGAATGGCAGTGTAAACTTCCAGCCATCA
AGCCCAAGACTGAGTTTCAACTGGGTTCCTTGCTGGTCTATGTTGATCACCTTCTTGGAGAAGGGGCCTTTGCCCAGGTC
TATGAAGTTACCCATGGAGAGGTGAATGATATCAAAAATAAACAGAAATTCGTTTTAAAGGTCCAAAAGCCCGCCAACCC
CTGGGAGTTCTACATCGGGACCCAGCTGATGGAGAGACTGAAGCCAAGCATGCGACACATGTTCATCAAATTCTATTCCG
CCCACTTCTTCCAGAACGGCAGTGTATTAGTAGGGGATCTCTACAGCTATGGCACGTTGCTAAATGCTATTAACCTCTAT
AAAAACACCCCAGAAAAAGTGATGCCACAAGCTCTGGTCCTGTCCTTCGCGATCAGAATGCTCTGCATGATTCAGCAAGT
GCACGACTGTGAGATAATTCACGGAGACATTAAGCCCGACAATTTCATACTGGGAAACAGATTTTTGGAACAGGATGGTG
ATGACGATGATGTATCTGCTGGCTTGGCGCTGATTGACCTGGGTCAGAGTATAGACATGAAACTTTTTCCTAAAGGAACT
ACATTTACAGCAAAGTATGAGACCTCTGGTTTTCAGTGTATCGAGATGCTCAGCAACAAGCCATGGAACTACCAGATTGA
CTACTTCGGAGTTGCTGCAACAGTGTACTGCATGCTTTTCGGCACTTACATGAAAGTGAGAAATGAAGGAGGTGTCTGGA
AGCCGGAAGGTCTTTTTAGGAGGCTGCCTCATCTGGACATGTGGAGTGAGTTCTTTCACATCATGTTGAATATTCCCGAT
TGTCATCATCTTCCGTCTTTGGATTTGTTAAGACAAAAACTGAAGAAAATATTTCAACAACACTATACAAACAAGATTAA
GACCCTACGTAACAGGCTGATCATACTGCTCTTAGAATATAAGCGTTCTCGAAAATAA

Alignment

ORF - retro_mputfur_13 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 97.05 %
• Parental protein coverage: 100. %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MDNPENVFQMFEAHMQSYKGDDPLGEWESYMQWVEENFPENKEYLTTLLEHLMKEFLDKKKYHNDPRFIN
          MDNPENVFQMFEAHMQSYKGDDPLGEWESYMQWVEENFPENKEYLTTLLEHLMKEFLDKKKYHNDPRFIN
Retrocopy MDNPENVFQMFEAHMQSYKGDDPLGEWESYMQWVEENFPENKEYLTTLLEHLMKEFLDKKKYHNDPRFIN

Parental  YCLKFAQYNSDLHQFFEFLYNHGIGTLSSPLYVAWAGHLEGQGELQHASAVLRRGLQNQAEPRELLQQHY
          .CLKFAQYNSDLHQFFEFLYNHGIGTLSSPLYVAWAGHLEGQGELQHASAVLRRGLQNQAEPRELLQQHY
Retrocopy CCLKFAQYNSDLHQFFEFLYNHGIGTLSSPLYVAWAGHLEGQGELQHASAVLRRGLQNQAEPRELLQQHY

Parental  RLFQARLTETHLPTQARTSEPLHNAQILNQMMTSKSNPGNNSACMSKNQGSEVSGVVSSVGDKESKKEQR
          RLFQARLTETHLPTQARTSEPLHNAQILNQMMTSKSNPGNNSACMSKNQGSEVSGVVS.VGDKESKKEQR
Retrocopy RLFQARLTETHLPTQARTSEPLHNAQILNQMMTSKSNPGNNSACMSKNQGSEVSGVVSTVGDKESKKEQR

Parental  VIVISKSEYSAQASSAARADIQQVVMYCKEKLIRGESEFSFEELRAQKYNQRRKHEQWVNEDRHYMKRKE
          VIVISKSEYSAQASSAARADIQQVVMYCKEKLIR.ESEFSFEELRAQKYNQRRKHEQWVNEDR.YMKRKE
Retrocopy VIVISKSEYSAQASSAARADIQQVVMYCKEKLIRRESEFSFEELRAQKYNQRRKHEQWVNEDRRYMKRKE

Parental  ANAFEEQLLKQKMDELHKKLHQVVETSQENLPVFQERSEFNPACMGPSVSSQEDLRAPSLPAINHQTSKN
          ANAFEEQLLKQKMDELHKKLHQVVET.QENLPVFQERSEFNPACMGPSVSSQEDLRAPSLPAINHQTSKN
Retrocopy ANAFEEQLLKQKMDELHKKLHQVVETFQENLPVFQERSEFNPACMGPSVSSQEDLRAPSLPAINHQTSKN

Parental  MGEKPRETTPVVPPMANAITATLVSPAISQSVSPPGPLAAQSDTDSMFAMTRKDDRCVTKSTHEFKPQSE
          MGEKPRETTPVVPPMANAITATLVSPAISQSVSPPGPL.AQSDTDSMFA.TRKDDRCVTKST.EFKPQSE
Retrocopy MGEKPRETTPVVPPMANAITATLVSPAISQSVSPPGPLSAQSDTDSMFAVTRKDDRCVTKSTREFKPQSE

Parental  AEIKEGSETHKVVNTGSFHTTPNTSLGMVQATPSRVQPSPTVHTKEALGFIMNMFQAPTLPDISDDKDEW
          AEIKEGSETHKVVNTG.FHTTPNTSLGMVQATPSRVQPSPTVHTKEALGFIMNMFQAPTLPDISDDKDEW
Retrocopy AEIKEGSETHKVVNTGFFHTTPNTSLGMVQATPSRVQPSPTVHTKEALGFIMNMFQAPTLPDISDDKDEW

Parental  PSLDQNEDAFEAQFQKNARSSGAWGVNKIISSLTSTFPVFEDGNKENYGLPQPKNKPAGARTFGERSVSR
          PSLDQNEDAF.AQFQKNARSSGAWGVNKIISSLTSTFPVFEDGNKENYGLPQPKNKPAGARTF.ERSVSR
Retrocopy PSLDQNEDAFQAQFQKNARSSGAWGVNKIISSLTSTFPVFEDGNKENYGLPQPKNKPAGARTFEERSVSR

Parental  FPSKPNKEVPHAEEFLDDSTVWGVRCNRTLAPSPKSPGHFTAAAQLASTPFHKPPADTGPSLEDKENVVA
          FPSKPN.EVPHAEE.LDDSTVWGV.CNRTLAPSPKSPGHFTAAAQLASTPFHKPP.DTGPSLEDKENVVA
Retrocopy FPSKPN-EVPHAEEILDDSTVWGVCCNRTLAPSPKSPGHFTAAAQLASTPFHKPPVDTGPSLEDKENVVA

Parental  KEYVHVTLDSCEENVGEPSKDRKFSSIQEKTPEAAFPADISSASLLRGSQPAAGGVLASEVAQSLEACKL
          KEYVHVTLDSCEEN.GEPSKDRKFSSIQEKTPE.AFPADISSASLLRGSQPAAGGVLASEVAQSLEACKL
Retrocopy KEYVHVTLDSCEENMGEPSKDRKFSSIQEKTPEPAFPADISSASLLRGSQPAAGGVLASEVAQSLEACKL

Parental  TDTNLTVAEDPPGAGAGHQAERTQTSSLENVNASNLTVENPWDDTLILKLLSELSKPVRSYPNTYEWQCK
          TDTNLTV.EDPPGAGAGHQAE.TQTSS.ENVNASNLTVENPWDDTLILKLLS.LSKPVRSYPNTYEWQCK
Retrocopy TDTNLTVTEDPPGAGAGHQAEWTQTSSFENVNASNLTVENPWDDTLILKLLSGLSKPVRSYPNTYEWQCK

Parental  LPAIKPKTEFQLGSLLVYVDHLLGEGAFAQVYEVTHGEVNDIKNKQKFVLKQQSLACHHFFFFGTQLMER
          LPAIKPKTEFQLGSLLVYVDHLLGEGAFAQVYEVTHGEVNDIKNKQKFVLK.Q..A....F..GTQLMER
Retrocopy LPAIKPKTEFQLGSLLVYVDHLLGEGAFAQVYEVTHGEVNDIKNKQKFVLKVQKPANPWEFYIGTQLMER

Parental  LKPSMRHMFIKFYSAHFFQNGSVLVGDLYSYGTLLNAINLYKNTPEKVMPQALVLSFAIRMLCMIQQVHD
          LKPSMRHMFIKFYSAHFFQNGSVLVGDLYSYGTLLNAINLYKNTPEKVMPQALVLSFAIRMLCMIQQVHD
Retrocopy LKPSMRHMFIKFYSAHFFQNGSVLVGDLYSYGTLLNAINLYKNTPEKVMPQALVLSFAIRMLCMIQQVHD

Parental  CEIIHGDIKPDNFILGNRFLEQDGDDDDVSAGLALIDLGQSIDMKLFPKGTTFTAKCETSGFQCIEMLSN
          CEIIHGDIKPDNFILGNRFLEQDGDDDDVSAGLALIDLGQSIDMKLFPKGTTFTAK.ETSGFQCIEMLSN
Retrocopy CEIIHGDIKPDNFILGNRFLEQDGDDDDVSAGLALIDLGQSIDMKLFPKGTTFTAKYETSGFQCIEMLSN

Parental  KPWNYQIDYFGVAATVYCMLFGTYMKVRNEGGVWKPEGLFRRLPHLDMWSEFFHIMLNIPDCHHLPSLDL
          KPWNYQIDYFGVAATVYCMLFGTYMKVRNEGGVWKPEGLFRRLPHLDMWSEFFHIMLNIPDCHHLPSLDL
Retrocopy KPWNYQIDYFGVAATVYCMLFGTYMKVRNEGGVWKPEGLFRRLPHLDMWSEFFHIMLNIPDCHHLPSLDL

Parental  LRQKLKKIFQQHYTNKIKTLRNRLIVLLLEYKRSRK
          LRQKLKKIFQQHYTNKIKTLRNRLI.LLLEYKRSRK
Retrocopy LRQKLKKIFQQHYTNKIKTLRNRLIILLLEYKRSRK

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_13 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_13 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Mustela putorius furo	ENSMPUG00000009309	1 retrocopy	retro_mputfur_13 ,