RetrogeneDB ID: retro_mputfur_1331

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL897084.1:949735..950501(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: WDR31
• Ensembl ID: ENSMPUG00000007888
• Aliases: None
• Description: WD repeat domain 31 [Source:HGNC Symbol;Acc:21421]

Sequence

>retro_mputfur_1331
ATTGCAGAAGAGAGAACTCGAACTAAAGCTTGTCAGCAGTAGAGCCCAGCCCCCATGAACACTGTCTCTGTTGTTGCTCT
GAACTCAGACCTGGGTGTCTCCAGAGGAAAAGATAAGCCAGTCATGGCCTCTAACTTGAAAACTGGAAATGTGGTGAAAG
GTTCAGAGAACAGGAACAAGAAATCACTAAGGTAGCCTGTATTTGCAAATCAAGTCAGTTCTTCAGCACCTGTCGTGAAA
GAATGGTCATGATGTGGGACGTACATGGTCCTTCACAACCAAGGCCACAGTTCCTAGCCACACCCTGGTGGTCACTGCAT
TGGCTATGAGTCCAGACATGTCACAGCTGTGTCCTGGCTCTTGGGACAGCACCCTGCTTCTGTGGGATGTTGGGACTCGT
GTACAGAGAGCCTCCGTCTCTAGGAACCCAGGCACTTAGCTGCGCTAGGTCCCCCAAGAACAACATACACTTAGACTTCT
GAAGATAAAACCATCAGATTATGGACAGTCGGGGGCTGCAGGTGCCTCATGCATTTCCTACAAAGCAGCAATATTCAGAC
TTCTGCAAGGTCAGCAAGGACAGACACAAATATGTGTCCTGCAGCAACGGCTTTGGAGGGGAAGGCTGTGAAGCCACATT
ATGGAACATAAGGCAGACATGGAACAGAAAATGAGAATATAAGGGCATTTCCAGACTCTTGCATCCTGCATCTTTCTACC
AAGAGCACTGGCCTCAATGCCTATAATTGCTACTTTATTACATGAC

Alignment

ORF - retro_mputfur_1331 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 66.42 %
• Parental protein coverage: 75.58 %
• Number of stop codons detected: 4
• Number of frameshifts detected: 5

Retrocopy - Parental Gene Alignment:

Parental  IIEERIQTKACLEYGPAHADSVSVVAALNSDLCVSGGKDKTVVAYNWKSGDVVK-RFRGHEREVTKIACI
          I.EER..TKAC....PA....VSVVA.LNSDL.VS.GKDK.V.A.N.K.G.VVK.RFR..E.E.TK.ACI
Retrocopy IAEERTRTKACQQ*SPAPMNTVSVVA-LNSDLGVSRGKDKPVMASNLKTGNVVK<RFREQEQEITKVACI

Parental  HGSSLFFSASRDRTARMWDLRGPAQPRQQF-SGHAMVVTGLAVSPDSSQLCTGSRDNTLLLWDVGTGQCM
          ..SS.FFS..R.R...MWD..GP.QPR.QF...H..VVT.LA.SPD.SQLC.GS.D.TLLLWDVGT....
Retrocopy CKSSQFFSTCRERMVMMWDVHGPSQPRPQF<PSHTLVVTALAMSPDMSQLCPGSWDSTLLLWDVGTR--V

Parental  DRASISRNLVTHLCWVPQEPYVLQ-TSEDKTIRLW-DSRGLQVAHVFPAKQHIQTYCEVSEDGHKCVSCS
          .RAS.SRN..T.L..VPQE...L..TSEDKTIRLW.DSRGLQV.H.FP.KQ.....C.VS.D.HK.VSCS
Retrocopy QRASVSRNPGT*LR*VPQEQHTLR<TSEDKTIRLW<DSRGLQVPHAFPTKQQYSDFCKVSKDRHKYVSCS

Parental  NGFGGEGCEATLWDLRQTRNRICEYK-GHFQTVASCVFLPRALASMPIIATSSHD
          NGFGGEGCEATLW..RQT.NR..EYK.GHFQT.ASC.FLPRALASMPIIAT..HD
Retrocopy NGFGGEGCEATLWNIRQTWNRK*EYK<GHFQTLASCIFLPRALASMPIIATLLHD

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_1331 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_1331 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 4 retrocopies.

Species	Parental gene accession	Retrocopies number
Canis familiaris	ENSCAFG00000003238	1 retrocopy	retro_cfam_1250,
Mustela putorius furo	ENSMPUG00000001148	2 retrocopies	retro_mputfur_1103, retro_mputfur_1111,
Mustela putorius furo	ENSMPUG00000007888	1 retrocopy	retro_mputfur_1331 ,