RetrogeneDB ID: retro_mputfur_1364

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL897097.1:2920161..2920502(+)
• Located in intron of: ENSMPUG00000007136

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMPUG00000010427
• Aliases: None
• Description: None

Sequence

>retro_mputfur_1364
CGTTATAGCCAATAGAGGAGAAGCAGGTCACAGTCTAGATAACATTTAAGATCCAGAGGTAGGTGATACTCTTGCTCATG
TAGCAGGAGCAGGGAAAGGAGTCAAGATCAGCATTTCCTCAGCCATCAAGATCTGTGTCTCTTTCAACATCAACCTTCAC
ACAGAAGATCTAGATCTGGTTCTATAAAAGGATCAAGATCCCTGTCGAGGCCAAGGTCAAGGTCAAGATCCAGGTCTGTT
TCACTACATGCAAGAAGCAGCCAAAGTCCAGATCTCCACCTCCAAAGAGAATTCATTCCCCATCAGGAAGTCCGCAAAGA
AGTGCACGTCCTGAAAGAGTG

Alignment

ORF - retro_mputfur_1364 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 55.08 %
• Parental protein coverage: 96.69 %
• Number of stop codons detected: 3
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  RGSTCKLARSRSRSHSRSRGRRYSRSRSRSRGRRSRSASPRRSRSVSLRRSRSASLRRSRSGSIKGSRYF
          R.S.....RS.SR.H.RSRGR.Y..S.S.SR.R.........S...........S.RRSRSGSIKGSR..
Retrocopy RYSQ*RRSRSQSR*HLRSRGR*Y--SCSCSRSRERSQDQHFLSHQDLCLFQHQPSHRRSRSGSIKGSRSL

Parental  QSRSRSRSRSRSLSRPRSS-RSKSRSPSPKRSRSPSGSPRRSASPERV
          .SR.RSRSRSRS.S....S...KSRSP.PKR..SPSGSP.RSA.PERV
Retrocopy -SRPRSRSRSRSVSLHARS<QPKSRSPPPKRIHSPSGSPQRSARPERV

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_1364 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_1364 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Mustela putorius furo	ENSMPUG00000010427	1 retrocopy	retro_mputfur_1364 ,