RetrogeneDB ID: retro_mputfur_1370

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL897100.1:3229414..3230233(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMPUG00000005151
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: GPI
• Ensembl ID: ENSMPUG00000007520
• Aliases: None
• Description: glucose-6-phosphate isomerase [Source:HGNC Symbol;Acc:4458]

Sequence

>retro_mputfur_1370
AGTAGGGGCGTGGAGGCTGCCCGGGATCGCATGTTCAGTGGCGAGAAGACCAACTTCACAAAGGAACGGGCAGTGCTGCA
TGTGGCCTTGCGAAACCGGTCAAACACACCCATTCTGGTGGATGGCAAGGATGTGATGCCAGAGGTCAACAGGGTCCTGG
AGAAGATGAAGTCTTTCTGTCAGCGCGTCCGCAGTGGCGAATGGAAGGGGTACTCGGGCAAGTCCATCACGGACGTCATT
AACATCGGCATTGGCGGCTCTGACCTGGGACCCCTCATGGTGACCGAAGCCCTTAAGCCGTACTCTTCAGGAGGTCCCCG
GGTTTGGTTTGTCTCCAACATCGACGGGACCCACATCGCCAAAACTCTGGCCACCCTGAATCCTGAGTTGTCCCTGTTCA
TCATTGCCTCCAAGACCTTTACCACCCAGGAGACCATTACGAATGCAGAGATGGCAAAGGAGTGGTTTCTCCTGTCGGCC
AAGGACCCTTCTGCAGTTGCAAAGCACTTTGTTGCCCTGTCTACCAACACGTCCAAAGTGACGGAGTTTGGGATTGACCC
TCAAAATATGTTCGAGTTCTGGGATTGGGTAGGAGGATGTTACTCGCTGTGGTCAGCCATTGGACTCTCCATCGCACTGC
ATGTGGGATTTGACAACTTTGAGCAGCTGCTCTCAGGGGCTCACTGGATGGACCAGCACTTCCGTACGATGCCCCTGGAG
AAGAACGCACGTGTCATCCTGGCCATGCTGGGCATCTGGTACATCAACTGCTTTGGGTGCGAGATGCAGGCCATGCTGCC
CTACGACCAGGGTTTGCAC

Alignment

ORF - retro_mputfur_1370 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 95.97 %
• Parental protein coverage: 53.74 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  SRGVEAARDRMFSGEKINFTEERAVLHVALRNRSNTPILVDGKDVMPEVNRVLEKMKSFCQRVRSGEWKG
          SRGVEAARDRMFSGEK.NFT.ERAVLHVALRNRSNTPILVDGKDVMPEVNRVLEKMKSFCQRVRSGEWKG
Retrocopy SRGVEAARDRMFSGEKTNFTKERAVLHVALRNRSNTPILVDGKDVMPEVNRVLEKMKSFCQRVRSGEWKG

Parental  YSGKPITDVINIGIGGSDLGPLMVTEALKPYSSGGPRVWFVSNIDGTHIAKTLATLNPESSLFIIASKTF
          YSGK.ITDVINIGIGGSDLGPLMVTEALKPYSSGGPRVWFVSNIDGTHIAKTLATLNPE.SLFIIASKTF
Retrocopy YSGKSITDVINIGIGGSDLGPLMVTEALKPYSSGGPRVWFVSNIDGTHIAKTLATLNPELSLFIIASKTF

Parental  TTQETITNAETAKEWFLLSAKDPSAVAKHFVALSTNTSKVKEFGIDPQNMFEFWDWVGGRYSLWSAIGLS
          TTQETITNAE.AKEWFLLSAKDPSAVAKHFVALSTNTSKV.EFGIDPQNMFEFWDWVGG.YSLWSAIGLS
Retrocopy TTQETITNAEMAKEWFLLSAKDPSAVAKHFVALSTNTSKVTEFGIDPQNMFEFWDWVGGCYSLWSAIGLS

Parental  IALHVGFDNFEQLLSGAHWMDQHFRTTPLEKNAPVILAMLGIWYINCFGCETQAMLPYDQYLH
          IALHVGFDNFEQLLSGAHWMDQHFRT.PLEKNA.VILAMLGIWYINCFGCE.QAMLPYDQ.LH
Retrocopy IALHVGFDNFEQLLSGAHWMDQHFRTMPLEKNARVILAMLGIWYINCFGCEMQAMLPYDQGLH

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_1370 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_1370 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 8 parental genes, and 13 retrocopies.

Species	Parental gene accession	Retrocopies number
Canis familiaris	ENSCAFG00000007303	3 retrocopies	retro_cfam_1715, retro_cfam_1935, retro_cfam_2101,
Cavia porcellus	ENSCPOG00000008562	1 retrocopy	retro_cpor_983,
Macropus eugenii	ENSMEUG00000010190	4 retrocopies	retro_meug_1022, retro_meug_1281, retro_meug_559, retro_meug_991,
Microcebus murinus	ENSMICG00000011620	1 retrocopy	retro_mmur_1496,
Myotis lucifugus	ENSMLUG00000003037	1 retrocopy	retro_mluc_444,
Macaca mulatta	ENSMMUG00000005880	1 retrocopy	retro_mmul_2086,
Mustela putorius furo	ENSMPUG00000007520	1 retrocopy	retro_mputfur_1370 ,
Mus musculus	ENSMUSG00000036427	1 retrocopy	retro_mmus_237,