RetrogeneDB ID: retro_mputfur_1373

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL897100.1:3213064..3213550(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMPUG00000005150
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: RHBDL2
• Ensembl ID: ENSMPUG00000014455
• Aliases: None
• Description: rhomboid, veinlet-like 2 (Drosophila) [Source:HGNC Symbol;Acc:16083]

Sequence

>retro_mputfur_1373
GAGGGAGGACCCAGGACAATGGCTGCTGACCATGATTTGGAGATGGAGGATATGAATCTGAATATGGATAGAGACATGGA
AGGAGAGCTGGAAGAAGAGAAGGAAATGAGAGAGGATGGTGGACGTGAAGATCCCTTCAAGAGTAAAAAGGTCCATAGGG
TTGTCTCGAAATGGATGCTTCCTGAAAAGGTCCGAAGAACATACTTGGAGAGAGCTAACTGCCTCCCACCCCCTGTGTTT
ATCATCTCCGTCAGCCTTGCTGAGCTGGCGGTGTTTATTTACTATGCCGTGTGGAAGCCTCAGAAACAGTGGATCACCCT
GGACACAGGCATCCTGGAGAGTCCCTTTACCTACAATCCCGAGAAGCGGGAGCAAGCCTGGAGGTCTGTCTCCTATATGC
TGGTCCACGCTGGAGTTCAGCACATCGTGGGGAATCTCATTATGCAGCTCGCTTTGGGTATTCCCTTGGAAATGGTCCAC
AAAGGT

Alignment

ORF - retro_mputfur_1373 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 96.91 %
• Parental protein coverage: 52.27 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  EGGPRTMAADHDLEMEDMNLNMDRDMEGELEEEQEMREDGGRE-AFKSKKVHRVVSKWMLPEKVRRTYLE
          EGGPRTMAADHDLEMEDMNLNMDRDMEGELEEE.EMREDGGRE..FKSKKVHRVVSKWMLPEKVRRTYLE
Retrocopy EGGPRTMAADHDLEMEDMNLNMDRDMEGELEEEKEMREDGGREDPFKSKKVHRVVSKWMLPEKVRRTYLE

Parental  RANCLPPPVFIISVSLAELVVFIYYAVWKPQKQWITLDTGILESPFTYNPEKREQAWRFVSYMLVHAGVQ
          RANCLPPPVFIISVSLAEL.VFIYYAVWKPQKQWITLDTGILESPFTYNPEKREQAWR.VSYMLVHAGVQ
Retrocopy RANCLPPPVFIISVSLAELAVFIYYAVWKPQKQWITLDTGILESPFTYNPEKREQAWRSVSYMLVHAGVQ

Parental  HIVGNLIMQLALGIPLEMVHKG
          HIVGNLIMQLALGIPLEMVHKG
Retrocopy HIVGNLIMQLALGIPLEMVHKG

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_1373 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_1373 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Mustela putorius furo	ENSMPUG00000014455	1 retrocopy	retro_mputfur_1373 ,
Mus musculus	ENSMUSG00000043333	1 retrocopy	retro_mmus_1681,