RetrogeneDB ID: retro_mputfur_1603

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL897329.1:359803..361009(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMPUG00000003053
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: RIPK2
• Ensembl ID: ENSMPUG00000010960
• Aliases: None
• Description: receptor-interacting serine-threonine kinase 2 [Source:HGNC Symbol;Acc:10020]

Sequence

>retro_mputfur_1603
ATGAACCAGGAGGGTATCTGCAGCGCCCTGCCTACCATTCCCTGCCACAAGCTCCCCGACCTGCGCTACCTGAGCCGCAG
CGGGTCAGGCACCGTGTCCTCTGCCCGCCACGCAGACTGGCGCATTCAGGTTGCCGTGAAGCAGCTGCACATCCACACCC
CGCTGCTCGACAGTGAAAGAAATGATGTTTTAGGAGAAGCTGATATTTTACACAAAGCTAGATTTAGTTACATTCTTCCA
ATTTGGGGAATTTGCAATGAGCCTGAATTTTTGGGAATAGTTACGGAATATATGCCAAATGGATCATTAAATGAATTCCT
CCATAGGAAAACGGAATATCCTGATGTTGCTTGGCCACTGAGATTTCGCATCCTGCATGAAATTACACTGGGTGTAAACT
ACTTGCACAATATGAATCTTCCTCTACTTCATCATGACTTAAAGACTCAAAATATCTTACTGGATAATGAATTTCATGCT
AAGATTGCAGATTTTGGTTTATCAAAATGGCGTATGATGTCCCTCTCACAAACATGGACTAGTAAATCTTCACCAGAAGG
ATGGACAATTATCTATATGCCACCTGAGAACTATGAACCTGGACAAAAATCAAGAGCCAGTGTCAAGCATGATATCTATA
GCTTTGCAGTGATCATGTGGGAAGTCTTATCCAGAAAACAGCCTTTTGAAGAAGTCACCAATCCTTTGCAGATCATGTAT
AGTGTATCACAAGGACATCGACCTAACACTAATGAAGAAAGTTTGCCACTTGATATACCTCATCGAACACTTATGATCTC
TCTAATAGAAAGTGGATGGGCACAAAATCCAGATGAAAGACCATCTTTCTTAAAATGTTTAATAGAACTTGAACCAGTTC
TGAGGACATTTGAAGAGATAACTTTTCTTGAAGCTGTTATTCAACTAAAGAAAACAAAGTTACAGAGTACTTTGAGCACT
ATTCACTTATGTGACAAGAAGAAAATGGACTCATCTCTGAACACACCTATAACTCATGGACCACAGAAGGAATCATGTGG
ATCCTCTCAGCTCCATGAAAGTAGTGATTCTACTATAGCCTCAAAGTCCCTGACAGCTCCTCAAGAAAATGATTTTTTAT
CTAGAAAAACTCAAGACTTTTCTACACTGTGTCACTATCCAGTAAATCACAGTTGCAATAGTAACATTTCTGTTCAGTTC
AGAAGA

Alignment

ORF - retro_mputfur_1603 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 94.03 %
• Parental protein coverage: 74.72 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MNREGICSALPTIPCHKLADLRYLSRGASGTVSSARHADWRVQVAVKQLHIHTPLLDSERNDVLREAEIL
          MN.EGICSALPTIPCHKL.DLRYLSR..SGTVSSARHADWR.QVAVKQLHIHTPLLDSERNDVL.EA.IL
Retrocopy MNQEGICSALPTIPCHKLPDLRYLSRSGSGTVSSARHADWRIQVAVKQLHIHTPLLDSERNDVLGEADIL

Parental  HKARFSYILPILGICNEPEFLGIVTEYMPNGSLNELLHRKTEYPDVAWPLRFRILHEIALGVNYLHNMNP
          HKARFSYILPI.GICNEPEFLGIVTEYMPNGSLNE.LHRKTEYPDVAWPLRFRILHEI.LGVNYLHNMN.
Retrocopy HKARFSYILPIWGICNEPEFLGIVTEYMPNGSLNEFLHRKTEYPDVAWPLRFRILHEITLGVNYLHNMNL

Parental  PLLHHDLKTQNILLDNEFHVKIADFGLSKWRMMSLSQSRTSKSSPEGGTIIYMPPENYEPGQKSRASIKH
          PLLHHDLKTQNILLDNEFH.KIADFGLSKWRMMSLSQ..TSKSSPEG.TIIYMPPENYEPGQKSRAS.KH
Retrocopy PLLHHDLKTQNILLDNEFHAKIADFGLSKWRMMSLSQTWTSKSSPEGWTIIYMPPENYEPGQKSRASVKH

Parental  DIYSFAVIMWEVLSRKQPFEEVTNPLQIMYSVSQGHRPNTNEESLPLDIPHRTLMISLIESGWAQNPDER
          DIYSFAVIMWEVLSRKQPFEEVTNPLQIMYSVSQGHRPNTNEESLPLDIPHRTLMISLIESGWAQNPDER
Retrocopy DIYSFAVIMWEVLSRKQPFEEVTNPLQIMYSVSQGHRPNTNEESLPLDIPHRTLMISLIESGWAQNPDER

Parental  PSFLKCLIELEPVLRTFEEIAFLEAVIQLKKTKLQSTLSTIHLCDMKKMDSSLNTPITHGPQEESCGSSQ
          PSFLKCLIELEPVLRTFEEI.FLEAVIQLKKTKLQSTLSTIHLCD.KKMDSSLNTPITHGPQ.ESCGSSQ
Retrocopy PSFLKCLIELEPVLRTFEEITFLEAVIQLKKTKLQSTLSTIHLCDKKKMDSSLNTPITHGPQKESCGSSQ

Parental  LHESSDSAIASKSLTAPQENDFLSRKTQDFSTLCHYPVNHSCNSNISAVQKR
          LHESSDS.IASKSLTAPQENDFLSRKTQDFSTLCHYPVNHSCNSNIS....R
Retrocopy LHESSDSTIASKSLTAPQENDFLSRKTQDFSTLCHYPVNHSCNSNISVQFRR

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_1603 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_1603 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Mustela putorius furo	ENSMPUG00000010960	1 retrocopy	retro_mputfur_1603 ,
Pteropus vampyrus	ENSPVAG00000003017	1 retrocopy	retro_pvam_679,