RetrogeneDB ID: retro_mputfur_162

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL896966.1:6407773..6408586(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMPUG00000018463
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMPUG00000001437
• Aliases: None
• Description: None

Sequence

>retro_mputfur_162
ATGGCGGCGTCTTCAAGTGGAGAGAAGGAGAAAGAGCGGCCGGGAGGCGGTTCTGGAGCGGCCGGCGGTAACAGCACGCG
AGAGCGACTGCTGTCTGCCCTGGAAGATCTGGAGGTCTTGTCGAGAGAACTTATAGAAATGTTAGCAATTTCAAGAAACC
AAAAGTTATTGCCACCTGATGAGGAAAACCAGGTCCTGGAGTTGTTAATTCACAGAGATGGGGAATTTCAAGAACTGATG
AAATTGGCAGTCAATCAGGGAAAAATCCATCATGAAATGCAAGTTTTAGAAAAGGAAGTGGAGAAGAGAGACCGTGATAT
TCAGCAACTACAAAAACAGCTCAAGGAAGCAGAACAAATACTGGCAACAGCTGTTTACCAAGCAAAAGAAAAACTCAAAT
CAATAGAAAAAGCAAGAAAAGGTGCCATCTCCTCTGAAGAAATAATTAAGTATGCACATAGGATTAGTGCAAGTAATGCT
GTATGTGCCCCACTGACCTGGGTTCCAGGGGACCCACGGAGGCCGTACCCAACTGATTTGGAGATGAGAAGTGGATTATT
GGGTCAAATGAACAATCCTTCCACTAATGGTGTAAATGGTCATTTACCAGGGGATGCACTTGCAGCAGGCAGATTGCCAG
ATGTCCTTGCTCCACAATATCCATGGCAGTCAAATGACATGTCAATGAATATGTTACCACCAAATCACAGTAATGACTTT
TTGTTGGAACCTCTGGGCCATAATAAAGAAAATGAAGATGATGTAGAAGTTATGTCAACAGACTCCTCTAGCAGCAGTAG
TGACTCTGATTAA

Alignment

ORF - retro_mputfur_162 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 98.52 %
• Parental protein coverage: 100. %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MAASSSGEKEKERPGGGSGAAGGNSTRERLLSALEDLEVLSRELIEMLAISRNQKLLPPDEENQVLELLI
          MAASSSGEKEKERPGGGSGAAGGNSTRERLLSALEDLEVLSRELIEMLAISRNQKLLPPDEENQVLELLI
Retrocopy MAASSSGEKEKERPGGGSGAAGGNSTRERLLSALEDLEVLSRELIEMLAISRNQKLLPPDEENQVLELLI

Parental  HRDGEFQELMKLALNQGKIHHEMQVLEKEVEKRDSDIQQLQKQLKEAEQILATAVYQAKEKLKSIEKARK
          HRDGEFQELMKLA.NQGKIHHEMQVLEKEVEKRD.DIQQLQKQLKEAEQILATAVYQAKEKLKSIEKARK
Retrocopy HRDGEFQELMKLAVNQGKIHHEMQVLEKEVEKRDRDIQQLQKQLKEAEQILATAVYQAKEKLKSIEKARK

Parental  GAISSEEIIKYAHRISASNAVCAPLTWVPGDPRRPYPTDLEMRSGLLGQMNNPSTNGVNG-LPGDALAAG
          GAISSEEIIKYAHRISASNAVCAPLTWVPGDPRRPYPTDLEMRSGLLGQMNNPSTNGVNG.LPGDALAAG
Retrocopy GAISSEEIIKYAHRISASNAVCAPLTWVPGDPRRPYPTDLEMRSGLLGQMNNPSTNGVNGHLPGDALAAG

Parental  RLPDVLAPQYPWQSNDMSMNMLPPNHSNDFLLEPPGHNKENEDDVEVMSTDSSSSSSDSD
          RLPDVLAPQYPWQSNDMSMNMLPPNHSNDFLLEP.GHNKENEDDVEVMSTDSSSSSSDSD
Retrocopy RLPDVLAPQYPWQSNDMSMNMLPPNHSNDFLLEPLGHNKENEDDVEVMSTDSSSSSSDSD

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_162 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_162 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 9 parental genes, and 9 retrocopies.

Species	Parental gene accession	Retrocopies number
Ailuropoda melanoleuca	ENSAMEG00000003718	1 retrocopy	retro_amel_1882,
Canis familiaris	ENSCAFG00000004451	1 retrocopy	retro_cfam_1792,
Callithrix jacchus	ENSCJAG00000009256	1 retrocopy	retro_cjac_3937,
Dasypus novemcinctus	ENSDNOG00000018064	1 retrocopy	retro_dnov_1342,
Myotis lucifugus	ENSMLUG00000009265	1 retrocopy	retro_mluc_178,
Mustela putorius furo	ENSMPUG00000001437	1 retrocopy	retro_mputfur_162 ,
Mus musculus	ENSMUSG00000022109	1 retrocopy	retro_mmus_3576,
Sorex araneus	ENSSARG00000001473	1 retrocopy	retro_sara_353,
Tupaia belangeri	ENSTBEG00000014259	1 retrocopy	retro_tbel_292,