RetrogeneDB ID: retro_mputfur_1648

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL897817.1:8838..9656(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: UBXN6
• Ensembl ID: ENSMPUG00000005027
• Aliases: None
• Description: UBX domain protein 6 [Source:HGNC Symbol;Acc:14928]

Sequence

>retro_mputfur_1648
CGGGATAGGGTGAACATGGGTGTGGGCATTATTTCTAAGAACGTGGACAGTGTCTATCTTCATCTCAAGGAGGAGAGGTA
CCGAAAGACCAAACTACAGAGCAAGGTGTTCCAGGAGTGTGTTAACTGCCTGGAAGAGACCCATGAGTTTTTTGAGGCCA
TTGGTTTCCAAAAGACAGTGCTTCCCAATTAATAGGGCACCTCAGAGTTCTACTATCTGAGGCAAGTCACCCTGGCCCAG
AGCCAGAACCTGGAGAGGGACAGAGAGCAGGGGCTGGGAGGGGAGCCAGAGGCAACCAAACTGAACCTACAGTCCTGGCT
ATTCAGCCCTTGGCTCCAGACCACCCAGTTCCTTCTGCCCTGGGGATTCCTTCCACCTCACAACAGACTTGATCTAGCAG
GAGCAGAGGTTCAGCTCTGAAGTAGTGGAGCTGTAGGGTGCTGCTGCCCAAAACCAGGAAGGAGAAGGAAGATGAAAAGA
GATGTGAAAATGTACCTACAAGCTGCTGTGTATCCGCTTCATCGAAGGCTGCCTCCTCTAGGGCGCCTCCTGTGCCTGGG
AGCAGGTGGAGTCAGTACTGTACAGATTCCTCCTTGAGCCCTGGAGAATGACTGGCAGCCTTTCCAGCTGCTAGCTTCAG
GAGGGCAGAAATTGTCGCAGAATGAGAACCTTGCCATTAATGAGTGTGAACTGGTGCCTTCAGTCCTCCTGACTTTCTCC
TGGGACACAACTGGGCTAGAGGACATGAAGGTCATGGGGCCAAACCACACTCATCTATCTTGAAGCTCAAGCTTCTGTGG
GGCATTAAGAAGCTCTCT

Alignment

ORF - retro_mputfur_1648 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 54.45 %
• Parental protein coverage: 62.22 %
• Number of stop codons detected: 5
• Number of frameshifts detected: 5

Retrocopy - Parental Gene Alignment:

Parental  RDRVKLGVDTIAKYLDNICLHPEEEKYRKIKLQNRVFQERINCLEGTHEFFEAIGFQKALLPVPDQEGPE
          RDRV..GV..I.K..D...LH..EE.YRK.KLQ..VFQE..NCLE.THEFFEAIGFQK..L..P...G..
Retrocopy RDRVNMGVGIISKNVDSVYLHLKEERYRKTKLQSKVFQECVNCLEETHEFFEAIGFQKTVL--PN**GTS

Parental  EFYVLSEGVLAQPQSLQRHKEQLLVAEPVRATLARQRRLFRPSPMASQFELP-GDFFNLTAEEIKREQRL
          EFY.L....LAQ.Q.L.R..EQ.L..EP....L..Q..LF.P.....QF.LP.GD.F.LT...I..EQR.
Retrocopy EFYYLRQVTLAQSQNLERDREQGLGGEPEATKLNLQSWLFSPWLQTTQFLLP>GDSFHLTTDLI*QEQRF

Parental  RSEAVERL-SVLRTKAMREREEQR-ELRKYTYTLLRVRLPDGCLLQGTFYARERV-AALYAFVRE-ALQN
          .S..V..L..VL..K...E.E....E..K.TY.LL..R...GCLL.G...A.E.V...LY.F..E.AL.N
Retrocopy -SSEVVEL>RVLLPKTRKEKEDEK<EM*KCTYKLLCIRFIEGCLL*GASCAWEQVESVLYRFLLE<ALEN

Parental  DWLPFDLLASGGQRLSEDESLAFNECGLVPSALLTFSWDAAVLEDIKAAGAN-PDSSILKPELLAAIEKL
          DW.PF.LLASGGQ.LS..E.LA.NEC.LVPS.LLTFSWD...LED.K..G.N.P.SSILK..LL..I.KL
Retrocopy DWQPFQLLASGGQKLSQNENLAINECELVPSVLLTFSWDTTGLEDMKVMGPN<PHSSILKLKLLWGIKKL

Parental  S
          S
Retrocopy S

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_1648 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_1648 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 3 retrocopies.

Species	Parental gene accession	Retrocopies number
Monodelphis domestica	ENSMODG00000000967	1 retrocopy	retro_mdom_249,
Mustela putorius furo	ENSMPUG00000005027	1 retrocopy	retro_mputfur_1648 ,
Sarcophilus harrisii	ENSSHAG00000000301	1 retrocopy	retro_shar_551,