RetrogeneDB ID: retro_mputfur_342

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL896904.1:19285494..19286264(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMPUG00000007090
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: UBE2Z
• Ensembl ID: ENSMPUG00000015342
• Aliases: None
• Description: ubiquitin-conjugating enzyme E2Z [Source:HGNC Symbol;Acc:25847]

Sequence

>retro_mputfur_342
CCGCAGTGTCTACTTCGGATCAAGCGGGATATCATGTCCATTTATAAGGAGCCTCCTCCAGGAATGTTCGTTGTACCTGA
TACTGTTGACATGACTAAGATTCATGCATTGATCACAGGCCCATTTGACACCCCTTATGAAGGGAGTTTCTTCCTGTTCG
TGTTTCGGTGTCCGCCCGACTATCCCATCCACCCGTCTCGGGTCAAACTGATGACAACGGGCAATAACACAGTGAGGTTT
AACCCCAACTTCTACCGCAATGGGAAAGTCTGCTTGAGTATTCTAGGTACGTGGGCTGGCCCCGCCTGGAGCCCAGCCCA
GAGCATCTCCTCCGTGTTGATCTCCATCCAGTCCCTAATGACTGAGAACCCCTATCACAATGAGCCTGGCTTTGAGCAGG
AGAGACATCCAGGAGACAGCAAAAATTACAATGAATGTATCCGGCATGAGACCATCAGAGTGGCAGTCTGTGACATGATG
GAGGAAAGTGTCCCTGCCCTGAGCCCTTACGAGGGGTGATGGAGAAGTCCTTCCTGGAGTATTACGTCTTCTATGAGGTG
GCTTGCAAAGATCGCCTGCACCTTCAAGGCCAGACAATGCAGGACCCTTTTGGAGAGAAGCGTGGCCACTTTGACTACCA
GTCCCTCTTGATGCGCCTGGGACTGATTCGTCAGAAAGTGCTGGAGAGGCTCCATAATGAGAACGCCGAAATGGACTCTG
ATAGCAGTTCGTCTGGGACAGAGACAGACCTGCACGGGAGCCTGAGGGTT

Alignment

ORF - retro_mputfur_342 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 96.12 %
• Parental protein coverage: 100. %
• Number of stop codons detected: 0
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  PHLLLVLYRDIMSIYKEPPPGMFVVPDTVDMTKIHALITGPFDTPYEGGFFLFVFRCPPDYPIHPPRVKL
          P..LL...RDIMSIYKEPPPGMFVVPDTVDMTKIHALITGPFDTPYEG.FFLFVFRCPPDYPIHP.RVKL
Retrocopy PQCLLRIKRDIMSIYKEPPPGMFVVPDTVDMTKIHALITGPFDTPYEGSFFLFVFRCPPDYPIHPSRVKL

Parental  MTTGNNTVRFNPNFYRNGKVCLSILGTWTGPAWSPAQSISSVLISIQSLMTENPYHNEPGFEQERHPGDS
          MTTGNNTVRFNPNFYRNGKVCLSILGTW.GPAWSPAQSISSVLISIQSLMTENPYHNEPGFEQERHPGDS
Retrocopy MTTGNNTVRFNPNFYRNGKVCLSILGTWAGPAWSPAQSISSVLISIQSLMTENPYHNEPGFEQERHPGDS

Parental  KNYNECIRHETIRVAVCDMME-GKCPCPEPLRGVMEKSFLEYYDFYEVACKDRLHLQGQTMQDPFGEKRG
          KNYNECIRHETIRVAVCDMME.GKCPCPEPLRGVMEKSFLEYY.FYEVACKDRLHLQGQTMQDPFGEKRG
Retrocopy KNYNECIRHETIRVAVCDMME<GKCPCPEPLRGVMEKSFLEYYVFYEVACKDRLHLQGQTMQDPFGEKRG

Parental  HFDYQSLLMRLGLIRQKVLERLHNENAEMDSDSSSSGTETDLHGSLRV
          HFDYQSLLMRLGLIRQKVLERLHNENAEMDSDSSSSGTETDLHGSLRV
Retrocopy HFDYQSLLMRLGLIRQKVLERLHNENAEMDSDSSSSGTETDLHGSLRV

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_342 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_342 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 3 retrocopies.

Species	Parental gene accession	Retrocopies number
Choloepus hoffmanni	ENSCHOG00000013754	1 retrocopy	retro_chof_2354,
Monodelphis domestica	ENSMODG00000012285	1 retrocopy	retro_mdom_839,
Mustela putorius furo	ENSMPUG00000015342	1 retrocopy	retro_mputfur_342 ,