RetrogeneDB ID:

retro_mputfur_512

Retrocopy
location
Organism:Ferret (Mustela putorius furo)
Coordinates:GL896917.1:11953665..11954019(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:CD59
Ensembl ID:ENSMPUG00000011525
Aliases:None
Description:CD59 molecule, complement regulatory protein [Source:HGNC Symbol;Acc:1689]


Retrocopy-Parental alignment summary:






>retro_mputfur_512
ATGGGAAGCAAAGGAGAATTCATCCTGTTTCTGCTTGTCCTGGCTGTCCTCTGCCACTCTGATCATAGCCTAACATGCTC
CATCTGTACTGAACCAGACCATGACTGCAATAAGACCACCACTTGTTCAGTTAATCTTGATATGTGTCTTTTTGTCAAAG
CTGAGCCAAAACTTGTTTACCACCAGGGTTGGAAGTTTGATAATTAAAATTACAAGTATATTTCAAAAGCCCCAGGGCTT
AAGAAGCTTGAGTACTGCTGCTGCCAGCAGGACCTGTGTAACAGAAATGCTGGGGTGAGTGTCTCCGGGAAGATGGCTCT
GCTGGCCACCCCACTGTTAGCAGTAGCCTAGACT

ORF - retro_mputfur_512 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 64.41 %
Parental protein coverage: 97.44 %
Number of stop codons detected: 2
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalMESKGGFI-FLLILAVLCRSGHSLTCYACIDSE-TCNKTTVCSVNHDACLLVKADPKLFYRQCWKFDDCS
M.SKG.FI.FLL.LAVLC.S.HSLTC..C......CNKTT.CSVN.D.CL.VKA.PKL.Y.Q.WKFD...
RetrocopyMGSKGEFILFLLVLAVLCHSDHSLTCSICTEPDHDCNKTTTCSVNLDMCLFVKAEPKLVYHQGWKFDN*N
ParentalYLSISKALGLKKLEYSCCQKDLCNGSA--RVSGMTALMLFPLLAAALT
Y..ISKA.GLKKLEY.CCQ.DLCN..A...VSG..AL...PLLA.A.T
RetrocopyYKYISKAPGLKKLEYCCCQQDLCNRNAGVSVSGKMALLATPLLAVA*T

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Mustela putorius furo was not studied using RNA-Seq expression data.
Mustela putorius furo was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_mputfur_512 retrocopy.
Mustela putorius furo was not studied using FANTOM5 data.
retro_mputfur_512 was not experimentally validated.

Retrocopy orthology:
Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 4 parental genes, and 4 retrocopies.

Species Parental gene accession Retrocopies number
Canis familiaris ENSCAFG000000285081 retrocopy
Dipodomys ordii ENSDORG000000088671 retrocopy
Mustela putorius furoENSMPUG00000011525 1 retrocopy
retro_mputfur_512 ,
Tursiops truncatus ENSTTRG000000163711 retrocopy



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