RetrogeneDB ID: | retro_mputfur_552 | ||
Retrocopy location | Organism: | Ferret (Mustela putorius furo) | |
| Coordinates: | GL896919.1:1665705..1666099(-) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | None | ||
| Ensembl ID: | ENSMPUG00000004366 | ||
| Aliases: | None | ||
| Description: | None |
Retrocopy-Parental alignment summary:
>retro_mputfur_552
CTTTCTGAAACCATCAGTGCTTCACAAGAACGTCTAGTGGAAAAGATTTTCAGTCCAAGTAGAGTCCTCCTTCCGGGGTT
CGAACGGGAGATCAAAATCCTGCTCTGGATGAAAGGACCCAACTCCAAGAGCAACTTTGAACTCTCCATCATGGGGAAAT
GCTGGTGCCAGGCAAAGTGCCAAAAGGCTGACTCGCATTTTGGCTTCAAAACCCTGATAGAAAGGATGTGGAGGCACTGT
AATCCTTAGCCTTGAAACCATGAATTCTCTTAAAAGAGAGAATATTCATTCTGGTGTCTTCCTCTGAACCATAGGGATGA
GCAGCCTGAAAGAAGCCATGCAGTCACTGAAAATAGGTTAGGTGACTGTCCAGGAACCTGTTACCACAATAGTG
ORF - retro_mputfur_552 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 57.58 % |
| Parental protein coverage: | 75.72 % |
| Number of stop codons detected: | 4 |
| Number of frameshifts detected: | 1 |
Retrocopy - Parental Gene Alignment:
| Parental | LKPSVLNVEARLLEKIFGPSRVLLPGFEREFKVVLQMRKPNSEGKVEIFILGR-RRYRKRAKRLIRILTT |
| L.........RL.EKIF.PSRVLLPGFERE.K..L.M..PNS....E..I.G.....R..AKRL.RIL.. | |
| Retrocopy | LSETISASQERLVEKIFSPSRVLLPGFEREIKILLWMKGPNSKSNFELSIMGK>AGARQSAKRLTRILAS |
| Parental | KPRRKSCEGTMMLSLETMKSLEKENVHSSAFLSTTVMNSLDEAMQSLEIGQETVQEPVTKTV |
| KP..K.C.GT..LSLETM.SL..EN.HS..FL.T..M.SL.EAMQSL.IG..TVQEPVT..V | |
| Retrocopy | KP**KGCGGTVILSLETMNSLKRENIHSGVFL*TIGMSSLKEAMQSLKIG*VTVQEPVTTIV |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Mustela putorius furo was not studied using RNA-Seq expression data.
Mustela putorius furo was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_mputfur_552 retrocopy.
Mustela putorius furo was not studied using FANTOM5 data.
retro_mputfur_552 was not experimentally validated.
Retrocopy orthology:
Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 1 parental gene, and 2 retrocopies.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Mustela putorius furo | ENSMPUG00000004366 | 2 retrocopies |
retro_mputfur_1062, retro_mputfur_552 ,
|