RetrogeneDB ID: retro_mputfur_65

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL897013.1:1387687..1388593(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMPUG00000018479
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMPUG00000016247
• Aliases: None
• Description: None

Sequence

>retro_mputfur_65
ATGGAGCGGATCCCGGCGCTTGGCCTGGGCACCTGGCAGGCGGCTCCAGGGGAAGTGACAGAGGCAGTGAAATTGGCCAT
CGACGCCGGATATCGGCACTTCGACTGCGCCTACTTATACCACAACGAGAGTGAGATTGGAGCCGGGATCCAGTGCAAGA
TCAAGGAGGGTGTGGTGAAGCGGGAGGACCTGTTTATCGTCAGTAAGCTCTGGTGCACCAGCCATGAGAAGTCCCTGGTG
AAAGCAGCATGCACCAAGAGTCTGAGGGCCTTGAAGCTGGATTACCTGGACCTCTACCTCATACACTGGCCCATGGGTTT
CAAGCCCGGGGTGGAAGACATGCCTTTGGACCCCAGCGGCATGGTGATACCCAGTGACACCGACTTCCTGGACACGTGGG
AGGCCATGGAGGACCTGGTGGTCATGGGGCTGGTGAAAGCCATCGGGGTGTCCAACTTCAACCATGAGCAGCTGGAGAGA
CTTTTGAACAAACCCAGCTTGGGATTCAGGCCAGTGACTAACCAGATTGAGTGCCACCCGTATCTGACCCAGAAGGACCT
GATCTGTTTCTGCCAGTCCAGAGACGTGTCCGTGACTGCGTACCGGCCTATCGGCGGTTCCAGTGAGGGGATGGACCTGA
TGAATGACCCCGTGATTCAGAGGGTGGCCCAGAAGTACAACAAGTCTCCGGCCCAGATTTTGCTGCGATTTCAGATCCAG
AGGAATGTGATCGTGATCCCCAAATCAGTCAACCCAAAGCGGATTCTTGAGAATATCCAGGTGTTTGACTTTGAACTATC
AGAACAGGATATGAAGGACATCTTCCGCCTGGACAGGAACTTCCGAATGTGCCGGCTACCCATAGCTGTGAACCACAAGG
ACTATCCTTTCAACATAGACTACTGA

Alignment

ORF - retro_mputfur_65 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 97.49 %
• Parental protein coverage: 63.38 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  TLQAAPGEVTEAVKLAIDAGYRHFDCAYLYHNESEIGAGIQCKIKEGVVKREDLFIVSKLWCTSHEKSLV
          T.QAAPGEVTEAVKLAIDAGYRHFDCAYLYHNESEIGAGIQCKIKEGVVKREDLFIVSKLWCTSHEKSLV
Retrocopy TWQAAPGEVTEAVKLAIDAGYRHFDCAYLYHNESEIGAGIQCKIKEGVVKREDLFIVSKLWCTSHEKSLV

Parental  KAACTKSLRALKLDYLDLYLIHWPMGFKPGVEDMPLDPSGMVIPSDTDFLDTWEAMEDLVVMGLVKAIGV
          KAACTKSLRALKLDYLDLYLIHWPMGFKPGVEDMPLDPSGMVIPSDTDFLDTWEAMEDLVVMGLVKAIGV
Retrocopy KAACTKSLRALKLDYLDLYLIHWPMGFKPGVEDMPLDPSGMVIPSDTDFLDTWEAMEDLVVMGLVKAIGV

Parental  SNFNHEQLERLLNKPSLRFRPVTNQIECHPYLTQKDLIRFCQSRDVSVTAYRPLGGSSK
          SNFNHEQLERLLNKPSL.FRPVTNQIECHPYLTQKDLI.FCQSRDVSVTAYRP.GGSS.
Retrocopy SNFNHEQLERLLNKPSLGFRPVTNQIECHPYLTQKDLICFCQSRDVSVTAYRPIGGSSE

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_65 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_65 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 3 retrocopies.

Species	Parental gene accession	Retrocopies number
Monodelphis domestica	ENSMODG00000018481	1 retrocopy	retro_mdom_1687,
Mustela putorius furo	ENSMPUG00000016247	1 retrocopy	retro_mputfur_65 ,
Rattus norvegicus	ENSRNOG00000017165	1 retrocopy	retro_rnor_1441,