RetrogeneDB ID:

retro_mputfur_65

Retrocopy
location
Organism:Ferret (Mustela putorius furo)
Coordinates:GL897013.1:1387687..1388593(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:ENSMPUG00000018479
Aliases:None
Status:KNOWN_PROTEIN_CODING
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:ENSMPUG00000016247
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_mputfur_65
ATGGAGCGGATCCCGGCGCTTGGCCTGGGCACCTGGCAGGCGGCTCCAGGGGAAGTGACAGAGGCAGTGAAATTGGCCAT
CGACGCCGGATATCGGCACTTCGACTGCGCCTACTTATACCACAACGAGAGTGAGATTGGAGCCGGGATCCAGTGCAAGA
TCAAGGAGGGTGTGGTGAAGCGGGAGGACCTGTTTATCGTCAGTAAGCTCTGGTGCACCAGCCATGAGAAGTCCCTGGTG
AAAGCAGCATGCACCAAGAGTCTGAGGGCCTTGAAGCTGGATTACCTGGACCTCTACCTCATACACTGGCCCATGGGTTT
CAAGCCCGGGGTGGAAGACATGCCTTTGGACCCCAGCGGCATGGTGATACCCAGTGACACCGACTTCCTGGACACGTGGG
AGGCCATGGAGGACCTGGTGGTCATGGGGCTGGTGAAAGCCATCGGGGTGTCCAACTTCAACCATGAGCAGCTGGAGAGA
CTTTTGAACAAACCCAGCTTGGGATTCAGGCCAGTGACTAACCAGATTGAGTGCCACCCGTATCTGACCCAGAAGGACCT
GATCTGTTTCTGCCAGTCCAGAGACGTGTCCGTGACTGCGTACCGGCCTATCGGCGGTTCCAGTGAGGGGATGGACCTGA
TGAATGACCCCGTGATTCAGAGGGTGGCCCAGAAGTACAACAAGTCTCCGGCCCAGATTTTGCTGCGATTTCAGATCCAG
AGGAATGTGATCGTGATCCCCAAATCAGTCAACCCAAAGCGGATTCTTGAGAATATCCAGGTGTTTGACTTTGAACTATC
AGAACAGGATATGAAGGACATCTTCCGCCTGGACAGGAACTTCCGAATGTGCCGGCTACCCATAGCTGTGAACCACAAGG
ACTATCCTTTCAACATAGACTACTGA

ORF - retro_mputfur_65 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 97.49 %
Parental protein coverage: 63.38 %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalTLQAAPGEVTEAVKLAIDAGYRHFDCAYLYHNESEIGAGIQCKIKEGVVKREDLFIVSKLWCTSHEKSLV
T.QAAPGEVTEAVKLAIDAGYRHFDCAYLYHNESEIGAGIQCKIKEGVVKREDLFIVSKLWCTSHEKSLV
RetrocopyTWQAAPGEVTEAVKLAIDAGYRHFDCAYLYHNESEIGAGIQCKIKEGVVKREDLFIVSKLWCTSHEKSLV
ParentalKAACTKSLRALKLDYLDLYLIHWPMGFKPGVEDMPLDPSGMVIPSDTDFLDTWEAMEDLVVMGLVKAIGV
KAACTKSLRALKLDYLDLYLIHWPMGFKPGVEDMPLDPSGMVIPSDTDFLDTWEAMEDLVVMGLVKAIGV
RetrocopyKAACTKSLRALKLDYLDLYLIHWPMGFKPGVEDMPLDPSGMVIPSDTDFLDTWEAMEDLVVMGLVKAIGV
ParentalSNFNHEQLERLLNKPSLRFRPVTNQIECHPYLTQKDLIRFCQSRDVSVTAYRPLGGSSK
SNFNHEQLERLLNKPSL.FRPVTNQIECHPYLTQKDLI.FCQSRDVSVTAYRP.GGSS.
RetrocopySNFNHEQLERLLNKPSLGFRPVTNQIECHPYLTQKDLICFCQSRDVSVTAYRPIGGSSE

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Mustela putorius furo was not studied using RNA-Seq expression data.
Mustela putorius furo was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_mputfur_65 retrocopy.
Mustela putorius furo was not studied using FANTOM5 data.
retro_mputfur_65 was not experimentally validated.

Retrocopy orthology:
Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 3 parental genes, and 3 retrocopies.

Species Parental gene accession Retrocopies number
Monodelphis domestica ENSMODG000000184811 retrocopy
Mustela putorius furoENSMPUG00000016247 1 retrocopy
retro_mputfur_65 ,
Rattus norvegicus ENSRNOG000000171651 retrocopy



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