RetrogeneDB ID: retro_mputfur_69

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL897012.1:1708637..1709774(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMPUG00000019950
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMPUG00000004760
• Aliases: None
• Description: None

Sequence

>retro_mputfur_69
CAAGGATGGGAGTATGATGAGCTGCCCCACTACCCAGGCATTGTAGACAGCACTGCAGCCCTGGCTGGCTTCTTAGAGGC
ACTGCCCTTGGCACTGAGAGCCCCCGGGCCTTATGGCCCCCATTGGCCTCCCCAACCCCAGCCCCTGGGCTTGGACAGTG
ATGGCCTGAGGAGGGAGAAGGATGAGATCTACAGACACCCACTCTTCCCACTGCTGGCCCTGGTCTTTGAGAAATGTGAA
TTGGCCACGTGCTCCCCCCGGGATGGGGCCGGTACTGGGCTGGGCACACCTCCAGGTGATGACGTATGCTCCTCTGATTC
CTTCAACGAGGACATTGCTGCCTTTGCCAAGCAGGTGCGCTCTGAGAGGCCCCTCTTCTCCTCCAACCCGGAGCTGGACA
ATCTGATGATACAGGCCATCCAGGTGCTCCGTTTCCACCTGCTGGAGCTGGAGAAGGTCCACGACCTGTGCGACAACGTC
TGTCACCGCTACATCACCTGCCTCAAGGGAAAGATGCCCATCGACCTGGTCATCGAGGATCGGGACGGTGGCTGCAGGGA
GGACCTCGAGGACTACCCGGCCTCCTGCCCCAGCCTCCCGGATCAGAATAATATGTGGATGAGAGACCATGAGGACAGCG
GGTCTGTACATTTGGGGACCCCGGGACCATCCAGTGGGGGCCTAGCCTCCCAGAGTGGGGACAACTCCAGTGACCAAGGA
GATGGACTAGACACAAGTGTGGCCTCTCCCAGTTCCGGGGGAGAGGACGAGGAGCTGGACCAGGAGCGGCGGCAGAATAA
GAAGAGGGGGATCTTCCCCAAGGTGGCTACTAACATCATGAGAGCATGGCTGTTCCAGCACCTCTCGCACCCATACCCCT
CGGAGGAGCAGAAGAAGCAGCTGGCGCAGGACACCGGGCTCACGATCCTGCAAGTCAACAACTGGTTCATCAACGCCCGG
AGACGCATCGTGCAACCAATGATTGATCAATCCAACCGCACAGGGCAGAGTGCAGCCTTCAGCCCAGAGGGCCAGCCCAT
GGGGGGCTACACGGAAGCTCAGCCACACATGACTGTCAGGCCTCCAGGGTTGATGGGAATGAGTTTGAACTTAGAAGGAG
AGTGGCATTATCTATAG

Alignment

ORF - retro_mputfur_69 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 94.97 %
• Parental protein coverage: 99.21 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  QYDELPHYPGLVDSTAALAGFPEAVPSAPRAPGPYGPHRPPQPQPLGLDSDGLRREKDEIYGHPLFPLLA
          .YDELPHYPG.VDSTAALAGF.EA.P.A.RAPGPYGPH.PPQPQPLGLDSDGLRREKDEIY.HPLFPLLA
Retrocopy EYDELPHYPGIVDSTAALAGFLEALPLALRAPGPYGPHWPPQPQPLGLDSDGLRREKDEIYRHPLFPLLA

Parental  LVFEKCELATCSPRDGASTGLGTPPGGDVCSSDSFNEDIAAFAKQVRSERPLFSSNPELDNLMIQAIQVL
          LVFEKCELATCSPRDGA.TGLGTPPG.DVCSSDSFNEDIAAFAKQVRSERPLFSSNPELDNLMIQAIQVL
Retrocopy LVFEKCELATCSPRDGAGTGLGTPPGDDVCSSDSFNEDIAAFAKQVRSERPLFSSNPELDNLMIQAIQVL

Parental  RFHLLELEKVHDLCDNFCHRYITCLKGKMPIDLVIEDRDGGCREDLEDYPASCPSLPDQNNMWIRDHEDS
          RFHLLELEKVHDLCDN.CHRYITCLKGKMPIDLVIEDRDGGCREDLEDYPASCPSLPDQNNMW.RDHEDS
Retrocopy RFHLLELEKVHDLCDNVCHRYITCLKGKMPIDLVIEDRDGGCREDLEDYPASCPSLPDQNNMWMRDHEDS

Parental  GSVHLGTPGPSSGGLASQSGDNSSDQGDGLDTSVASPSSGGEDEELDQERRRNKKRGIFPKVATNIMRAW
          GSVHLGTPGPSSGGLASQSGDNSSDQGDGLDTSVASPSSGGEDEELDQERR.NKKRGIFPKVATNIMRAW
Retrocopy GSVHLGTPGPSSGGLASQSGDNSSDQGDGLDTSVASPSSGGEDEELDQERRQNKKRGIFPKVATNIMRAW

Parental  LFQHLSHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMIDQSNRTGQSAAFSPEGQPMGGYTEA
          LFQHLSHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMIDQSNRTGQSAAFSPEGQPMGGYTEA
Retrocopy LFQHLSHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMIDQSNRTGQSAAFSPEGQPMGGYTEA

Parental  QPHMTVRPPVYLWSMGMSLNLEGEWHYL
          QPHMTVRPP......GMSLNLEGEWHYL
Retrocopy QPHMTVRPPGLM---GMSLNLEGEWHYL

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_69 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_69 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 4 parental genes, and 5 retrocopies.

Species	Parental gene accession	Retrocopies number
Homo sapiens	ENSG00000105419	2 retrocopies	retro_hsap_1718, retro_hsap_1731,
Gorilla gorilla	ENSGGOG00000001093	1 retrocopy	retro_ggor_2263,
Mustela putorius furo	ENSMPUG00000004760	1 retrocopy	retro_mputfur_69 ,
Pan troglodytes	ENSPTRG00000011208	1 retrocopy	retro_ptro_3061,