RetrogeneDB ID: retro_mputfur_72

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL896996.1:1928580..1929408(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMPUG00000019758
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMPUG00000014079
• Aliases: None
• Description: None

Sequence

>retro_mputfur_72
ATGGGAAAGTCTTTTTCACATTTGCCTTTGCATTCAAATAAAGAAGATGCTTATGATGGAGTCACATCAACTGAAAACAT
GAGGAATGGACTGCTTAATAATGAAGTCCATAATGAAGATGGAAGAGGTGGAGATGTCTCTCAGTTTCCGTATGTGGAAT
TTACAGGAAGAGATAGTGTCACTTGTCCCACTTGTCAAGGAACAGGAAGAATTCCTAGGGGGCAAGAAAACCAGCTGGTG
GCACTGATTCCATATAGTGATCAGAGATTAAGGCCAAGAAGGACAAAGCTGTATGTGATGGCTTCTGTGTTTGTCTGTCT
GCTCCTTTCTGGATTGGCTGTGTTTTTCCTTTTCCCTCGCTCTATTGACGTGAAATACATTGGCGTAAAATCAGCATACG
TCAGTTATGATGTTCAAAAGCGTACAGTATATTTAAATATCACGAACACACTAAATATAACAAACAATAACTATTATTCT
GTTGAAGTTGAAAACATCACTGCACAAGTTCAGTTTTCAAAAACAGTTATCGGAAAGGCATGCTTAAACAACATAACCAA
TATTGGCCCACTGGATATGAAACAAATTGATTATACAGTACCTACTGTCATAGCAGAGGAAATGAGTTACATGTATGATT
TCTGTACACTGATATCCATCAAAGTGCATAACATAGTACTCATGATGCAAGTTACTGTGACAACAACGTACTTTGGACAC
TCTGAACAGATATCGCAGGAGAGGTACCAGTATGTTGATTGTGGAAGGAACACAACTTACCAGTTGGGGCAGTCTGAGTA
TCTAAATGTACTTCAGCCACAACAGTAA

Alignment

ORF - retro_mputfur_72 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 100. %
• Parental protein coverage: 100. %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MGKSFSHLPLHSNKEDAYDGVTSTENMRNGLLNNEVHNEDGRGGDVSQFPYVEFTGRDSVTCPTCQGTGR
          MGKSFSHLPLHSNKEDAYDGVTSTENMRNGLLNNEVHNEDGRGGDVSQFPYVEFTGRDSVTCPTCQGTGR
Retrocopy MGKSFSHLPLHSNKEDAYDGVTSTENMRNGLLNNEVHNEDGRGGDVSQFPYVEFTGRDSVTCPTCQGTGR

Parental  IPRGQENQLVALIPYSDQRLRPRRTKLYVMASVFVCLLLSGLAVFFLFPRSIDVKYIGVKSAYVSYDVQK
          IPRGQENQLVALIPYSDQRLRPRRTKLYVMASVFVCLLLSGLAVFFLFPRSIDVKYIGVKSAYVSYDVQK
Retrocopy IPRGQENQLVALIPYSDQRLRPRRTKLYVMASVFVCLLLSGLAVFFLFPRSIDVKYIGVKSAYVSYDVQK

Parental  RTVYLNITNTLNITNNNYYSVEVENITAQVQFSKTVIGKACLNNITNIGPLDMKQIDYTVPTVIAEEMSY
          RTVYLNITNTLNITNNNYYSVEVENITAQVQFSKTVIGKACLNNITNIGPLDMKQIDYTVPTVIAEEMSY
Retrocopy RTVYLNITNTLNITNNNYYSVEVENITAQVQFSKTVIGKACLNNITNIGPLDMKQIDYTVPTVIAEEMSY

Parental  MYDFCTLISIKVHNIVLMMQVTVTTTYFGHSEQISQERYQYVDCGRNTTYQLGQSEYLNVLQPQQ
          MYDFCTLISIKVHNIVLMMQVTVTTTYFGHSEQISQERYQYVDCGRNTTYQLGQSEYLNVLQPQQ
Retrocopy MYDFCTLISIKVHNIVLMMQVTVTTTYFGHSEQISQERYQYVDCGRNTTYQLGQSEYLNVLQPQQ

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_72 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_72 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 3 retrocopies.

Species	Parental gene accession	Retrocopies number
Canis familiaris	ENSCAFG00000002306	1 retrocopy	retro_cfam_50,
Mustela putorius furo	ENSMPUG00000014079	1 retrocopy	retro_mputfur_72 ,
Otolemur garnettii	ENSOGAG00000009729	1 retrocopy	retro_ogar_2133,