RetrogeneDB ID: retro_mputfur_905

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL896969.1:341862..342333(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: STX6
• Ensembl ID: ENSMPUG00000011478
• Aliases: None
• Description: syntaxin 6 [Source:HGNC Symbol;Acc:11441]

Sequence

>retro_mputfur_905
ATGTCTATGGAGAACTCCTACTTTGTGAAAGGAGAAGTACAGAAAGCAGTCAACACCATCCAGGGACTATTCCAGAGATG
GACAGAGCTCCTCCAGGACCCCTCCATAGCAACGAGGGAAGAAATCCACTAGATCACTGATGAGCTGAGGAACAACCTCT
GGAGCATAGAATGGGATCTAGAGGACCTTGATGAGATCATAGCAGAGTTTAAGCAAATGCTAGAAAATTCAAACTCGATG
CAACTGAATGAAGTATAAGATAAACCTTCGTGCCAAGTACTTGGCAGATTGTCAGGGGCATGAAGGATCAGATGTCAGCT
TCATCTGTGCAGGCATTAGCTGAACCAACGACTAGACAGGTACGGCCAGTGGACAGTGGTGGCCAGAACTGGACTGCCGG
AATACAGAGAAATATACAGACACCTCGACCTCGGGCTCTAGTTGGCCAACTCCCATTCTATGATGGAGCAG

Alignment

ORF - retro_mputfur_905 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 71.25 %
• Parental protein coverage: 61.96 %
• Number of stop codons detected: 5
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  MSMEDPFFVVKGEVQKAVNTAQGLFQRWTELLQDPSTATREEIDWTTNELRNNLRSIEWDLEDLDETI-S
          MSME...FV.KGEVQKAVNT.QGLFQRWTELLQDPS.ATREEI...T.ELRNNL.SIEWDLEDLDE.I.S
Retrocopy MSMENSYFV-KGEVQKAVNTIQGLFQRWTELLQDPSIATREEIH*ITDELRNNLWSIEWDLEDLDEII<S

Parental  IVEANPRKFNLDATELSIRKTFITSTRQVVRDMKDQMSASSVQALAERKNRQALLGDSGGQNWSTGT-TD
          .V.AN.RKF.LDATE.SIR.TF..ST.Q.VR.MKDQMSASSVQALAE...RQ....DSGGQNW..G....
Retrocopy RV*ANARKFKLDATE*SIR*TFVPSTWQIVRGMKDQMSASSVQALAEPTTRQVRPVDSGGQNWTAGI>RE

Parental  KYGRLDRELQLANSHFIEEQ
          .Y..LD..L.LANSH...EQ
Retrocopy IYRHLDLGL*LANSHSMMEQ

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_905 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_905 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 3 retrocopies.

Species	Parental gene accession	Retrocopies number
Mustela putorius furo	ENSMPUG00000011478	1 retrocopy	retro_mputfur_905 ,
Oryctolagus cuniculus	ENSOCUG00000004714	1 retrocopy	retro_ocun_552,
Pelodiscus sinensis	ENSPSIG00000009402	1 retrocopy	retro_psin_57,