RetrogeneDB ID: retro_mputfur_930

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL896975.1:4454875..4455270(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: Cnpy2
• Ensembl ID: ENSMPUG00000001366
• Aliases: None
• Description: canopy 2 homolog (zebrafish) [Source:MGI Symbol;Acc:MGI:1928477]

Sequence

>retro_mputfur_930
CCCAAGAAGACCTTTCAGATGGGCTCTTTCCAAATCAACCCAGATGATCACCATTCAGGGGTGGAGGTGCCCCATGCTCA
TGCAGAGGCCTGTCTCACAGAGCTGCTGACTGGATGCAGGAGCACGGCGGTCAGACTGACCCCTCCACCCACTGCAAGAA
CTATGTCCATGGAGTGCACCAAAATGGAGAATCCAATGAACTGGACCTGGAGGCTATCTGGACAGATTCAGACATGTGGG
GCACTCTCAAATTTGCCAGTGAGAGTACTGTGGAGGAACAGGAGGGTGAACTCATTGAATTCTATTCCCAAGAGGCTGAC
GATGCGAAAGACAAACTTACTTGTAGCTGAACAGAAGTATGGGCTCATGCCCTGGACATATCCCTCGATGAGCTA

Alignment

ORF - retro_mputfur_930 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 61.31 %
• Parental protein coverage: 53.54 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  PKKTIQMGSFRINPDGSQSVVEVPYARSEAHLTELLEEV-CDRMKEYGEQIDPSTHRKNYVRVVGRNGES
          PKKT.QMGSF.INPD...S.VEVP.....AH....L.E...D.M.E.G.Q.DPSTH.KNYV..V..NGES
Retrocopy PKKTFQMGSFQINPDDHHSGVEVPH----AHAEACLTEL<ADWMQEHGGQTDPSTHCKNYVHGVHQNGES

Parental  NELDLQGIRIDSDISGTLKFACESIVEEYEDELIEFFSREADNVKDKLCSKRTDLCDHALHISHDEL
          NELDL..I..DSD..GTLKFA.ES.VEE.E.ELIEF.S.EAD..KDKL....T....HAL.IS.DEL
Retrocopy NELDLEAIWTDSDMWGTLKFASESTVEEQEGELIEFYSQEADDAKDKLTCS*TEVWAHALDISLDEL

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_930 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_930 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 4 parental genes, and 4 retrocopies.

Species	Parental gene accession	Retrocopies number
Callithrix jacchus	ENSCJAG00000011259	1 retrocopy	retro_cjac_1188,
Dasypus novemcinctus	ENSDNOG00000010925	1 retrocopy	retro_dnov_444,
Mustela putorius furo	ENSMPUG00000001366	1 retrocopy	retro_mputfur_930 ,
Ictidomys tridecemlineatus	ENSSTOG00000015971	1 retrocopy	retro_itri_928,