>retro_mtru_11
ATGTCGTTCTCCTTCTATACAACGGCGCAGGAAGTGGTAGAGTCTTTGAAAGAGAGTCTCATGGCACTGAATCCCAAAAC
TCATGTTGAAGATAAAGCCCTTAAGAAAGCTTTAGAGAAAGTTGAAAAGAATTTTGGAACAATGAGAACTATGCTTTCTG
AAAATGGAATATATTCAGAATCGCTGAATTTAGATCGAGTTTCACAGTTTGTCGAAGAAATATGCAAGGCGGATGTTCTT
ACTCTTGTAATTCAAAAGCTGCCTATACTTGGATGGCAAGCTAGAAAGGATTTAGTACACTGTTGGTCAATATTTTTTAA
ACAAAAGGTCGTTGACACCAACGATTATTCGTGCGTGGAATACATCGAACAACACATTGAATTACTAGACTTTCTTCTTG
TTTGCTATGATAAGAATGGAACTGCGCCGAGCTCTGGCATAATGTTGCGGGAATGCATCAAATTTCCTAATCTTGCAAAA
GGCTTATTGGAATCTCCAAGATTTGGGCTGTTCTTTAAATATGTAGATTTGCCTAACTTCGATGTAGCATATGATGCATT
TTCTACATTAAAGGAACTTCTCACTAAACATGTTAATGTGGTCTCTGAGTATTTGAAAACTCACTGTGATGTGTTCTTTG
ATCTATACAATGAGAATCTCTTGAAGTCTCCTAATTATGCCACAAGGAGAGGGTCTATAAATCTTCTCTTGGATATTCTT
TTGGAAACTTCAAAAGAAACTTCTGATGCTCGGATAATGAAGCGATACATCTCACAAGTTCGTTATTTGAAAGTTGTGAT
GACATTGTTGACAGATTCAAGTAAAAAAATTCAGTTATCAGCTTTCGACATTTTCAAGTTTTTCGTTGCGAATCCTAATA
AGCCTCGAGAAGTGAAAATTATTCTATGCAAGAATAAGGAAAAACTGTTAGAATTGCTTCATAAATTATCTCTGGTAAAA
GATTCAAAAGAAGATGAGCAATTTAAGGAGGAAAAGGAGTATATCATCAAAGAAATTGAAAGAATATCAATCTAA
ORF - retro_mtru_11 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
72.4 % |
Parental protein coverage: |
96.46 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | TPQEVVKSIKESLMALDTKTVVEVKALEKALEEVEKNFVTMRTMISGDG--ESEPNLDQVSQLVEEICKE |
| T.QEVV.S.KESLMAL..KT.VE.KAL.KALE.VEKNF.TMRTM.S..G......NLD.VSQ.VEEICK. |
Retrocopy | TAQEVVESLKESLMALNPKTHVEDKALKKALEKVEKNFGTMRTMLSENGIYSESLNLDRVSQFVEEICKA |
|
Parental | DVLTLLIHKLPILGWEARKDLVHCWTILLKQKV-DSND-CCVEYIHQHIELLDFLVACYDNKEIALSSGI |
| DVLTL.I.KLPILGW.ARKDLVHCW.I..KQKV.D.ND..CVEYI.QHIELLDFL..CYD....A.SSGI |
Retrocopy | DVLTLVIQKLPILGWQARKDLVHCWSIFFKQKVVDTNDYSCVEYIEQHIELLDFLLVCYDKNGTAPSSGI |
|
Parental | MLRECIKFPNLAKYILESASFVLFFKYVELPNFDVASDAFSTFKDLLSKHATVVAEFLTAHYDEFFDQY- |
| MLRECIKFPNLAK..LES..F.LFFKYV.LPNFDVA.DAFST.K.LL.KH..VV.E.L..H.D.FFD.Y. |
Retrocopy | MLRECIKFPNLAKGLLESPRFGLFFKYVDLPNFDVAYDAFSTLKELLTKHVNVVSEYLKTHCDVFFDLYN |
|
Parental | EKLLTSPNYVTRRQSIKLLSDFLLE----SPNAQIMKRYILEVRFLKVMMTLLTDSSKNIQLSAFHIFKI |
| E.LL.SPNY.TRR.SI.LL.D.LLE.......A.IMKRYI..VR.LKV.MTLLTDSSK.IQLSAF.IFK. |
Retrocopy | ENLLKSPNYATRRGSINLLLDILLETSKETSDARIMKRYISQVRYLKVVMTLLTDSSKKIQLSAFDIFKF |
|
Parental | FVANPNKPRDVKIILGKNKGKLLELLHNLSPGKGS-EDEQFEEEKEFIIKEIERISV |
| FVANPNKPR.VKIIL.KNK.KLLELLH.LS..K.S.EDEQF.EEKE.IIKEIERIS. |
Retrocopy | FVANPNKPREVKIILCKNKEKLLELLHKLSLVKDSKEDEQFKEEKEYIIKEIERISI |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Medicago truncatula was not studied using RNA-Seq expression data.
Medicago truncatula was not studied using ChIP-Seq data.
Medicago truncatula was not studied using EST data.
Medicago truncatula was not studied using FANTOM5 data.
retro_mtru_11 was not experimentally validated.
Retrocopy orthology:
Medicago truncatula does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
1 parental gene, and
1 retrocopy.