RetrogeneDB ID: | retro_mtru_16 | ||
Retrocopylocation | Organism: | Barrel medic (Medicago truncatula) | |
Coordinates: | 4:17327559..17328279(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | MTR_4g049340 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | MTR_7g085070 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 56.06 % |
Parental protein coverage: | 80.08 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | PSLIVTTTLVFLLVFLFTMIGNAMGGASFNPTGTAAFYSVGLGSDT-LFSMALRFPAQALGAAGGAMAIA |
P.L..TT.L..........IG...GGASFNP..T..FY..GL..D..L.S.A.RFPAQA.G.A.G...I. | |
Retrocopy | PGLFITTILNTIIILTISLIGRILGGASFNPSSTISFYTLGLRPDSSLLSFAIRFPAQAIGGAIGIKSIL |
Parental | ELIHPKYKHMIRGPSLKVDLHTGAAAELVLTFVITFAVLCIFLKGPRNDLMKIWLLAMSTVTLVMVGSAY |
..I...YK.M..GPSLKVDLHTGA.AE.VLTF...F..L...LKGP.N...K..LL...T..LV..GS.Y | |
Retrocopy | QVIPTEYKDMVKGPSLKVDLHTGAIAEGVLTFTHNFVILLVMLKGPKNPWLKVYLLSVATLVLVIIGSGY |
Parental | TGPSMNPANAFGWAYLNNWHNTWDQFYVYWICPFTGAILAAWLFKAIFPPPEVKQKKA |
TGPSMNPANAFGWAY.NN.HNTW.QFYV.WICP..GA..AA......F..P.VK.KKA | |
Retrocopy | TGPSMNPANAFGWAYMNNKHNTWEQFYVFWICPLIGASSAAMVYRFLFMSP-VKEKKA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Medicago truncatula | MTR_7g085070 | 1 retrocopy |
retro_mtru_16 ,
|
Populus trichocarpa | POPTR_0013s05030 | 1 retrocopy | |
Prunus persica | PRUPE_ppa010591mg | 1 retrocopy | |
Theobroma cacao | TCM_026035 | 1 retrocopy |