>retro_mtru_27
ATGGCCAGGATCAAAGTTCACGAGTTGAGGCAGAAGACCAAAGCTGATCTATTGGCTCAGCTCAAAGACCTCAAAGCTGA
ACTAGCTTTGCTCCGTGTTGCTAAGGCCACTCGGGCTGCACCCAACAATCTCTCCAAAATTAAGGAGGTAAGGTTGTCGA
TTGCTCAGGTTTTGACAGTGATTTCCCAGAAGCGGAAAGCTGCATTGAGGGAAGTTTACAAGAACAAGAAGTATTTGCCA
ATTGATCTCCGCCCAAAGAAGACCAGGGCCGTTCGCAGGAGGCTCACCAAGCATCAGTCCTCATTGAAGACCGAGATGGA
AAAGAAAAAGGAGACATATTTCACAATGAGGAAATATGCTATCAAGGCATAG
ORF - retro_mtru_27 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
88.33 % |
Parental protein coverage: |
99.17 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | VKVHELRQKNKTDLLAQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREVY |
| .KVHELRQK.K.DLLAQLKDLKAEL.LLRVAK.T..APN.LSKIK.VRLSIAQVLTVISQK.KAALREVY |
Retrocopy | IKVHELRQKTKADLLAQLKDLKAELALLRVAKATRAAPNNLSKIKEVRLSIAQVLTVISQKRKAALREVY |
|
Parental | KNKKYLPLDLRPKKTRAIRRRLTKHQSSLKTEREKKKETYFPMRKYAIKA |
| KNKKYLP.DLRPKKTRA.RRRLTKHQSSLKTE.EKKKETYF.MRKYAIKA |
Retrocopy | KNKKYLPIDLRPKKTRAVRRRLTKHQSSLKTEMEKKKETYFTMRKYAIKA |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Medicago truncatula was not studied using RNA-Seq expression data.
Medicago truncatula was not studied using ChIP-Seq data.
Medicago truncatula was not studied using EST data.
Medicago truncatula was not studied using FANTOM5 data.
retro_mtru_27 was not experimentally validated.
Retrocopy orthology:
Medicago truncatula does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
1 parental gene, and
1 retrocopy.