RetrogeneDB ID:

retro_mtru_33

Retrocopy
location
Organism:Barrel medic (Medicago truncatula)
Coordinates:scaffold0050:43451..43826(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:MTR_0050s0130
Aliases:None
Status:KNOWN_PROTEIN_CODING
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:MTR_7g102930
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_mtru_33
ATGTCGAAGAGCTCGTTTCAAAACGACGTGCCATGGAGAGCTTCATCTTCTTCAGCAAAACCAATACCCAAAATTCATCA
CTCTCCAATTCTTCGCGTTTCTCAGAATCCCTTTTCAGATTATGCAATTTCCATCATGAGGCATCCAGACCCTATTGGGG
ATGGTTTGGGTGATGACGCTATAGTTGAAGCAGCTGGTCCTGAATGCATCATATTTGGTCAAGTTACTCCCATTAAATTA
CTTGGCCTTAAGGTCTGGCCTATCAAAGTTGACCTGAAATTTTTGGAACCAATTGGCCGAGAACTTAAGCAGCAGCTTGG
GAAGGTCATGGATGACGTTGAGGAACTTATGAGCAAATCATTCATAGATCGTTGA

ORF - retro_mtru_33 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 94.35 %
Parental protein coverage: 100. %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalMSKSSFQNDVPWRASSSSTKPIPKIHHSPILRVSQNPFSDYAISIMRHPDPIGDGLGDDAIVEAAGPECI
MSKSSFQNDVPWRASSSS.KPIPKIHHSPILRVSQNPFSDYAISIMRHPDPIGDGLGDDAIVEAAGPECI
RetrocopyMSKSSFQNDVPWRASSSSAKPIPKIHHSPILRVSQNPFSDYAISIMRHPDPIGDGLGDDAIVEAAGPECI
ParentalIPGQVTPIKLLGLKVWPIEVDLKFLEPIGRELK-QLGKVMDDAVELMNKSFIDR
I.GQVTPIKLLGLKVWPI.VDLKFLEPIGRELK.QLGKVMDD..ELM.KSFIDR
RetrocopyIFGQVTPIKLLGLKVWPIKVDLKFLEPIGRELKQQLGKVMDDVEELMSKSFIDR

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Medicago truncatula was not studied using RNA-Seq expression data.
Medicago truncatula was not studied using ChIP-Seq data.
Medicago truncatula was not studied using EST data.
Medicago truncatula was not studied using FANTOM5 data.
retro_mtru_33 was not experimentally validated.

Retrocopy orthology:
Medicago truncatula does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species Parental gene accession Retrocopies number
Medicago truncatula MTR_7g102930 1 retrocopy
retro_mtru_33 ,



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